View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_2 (Length: 1028)

Name: NF11788_low_2
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_2
NF11788_low_2
[»] chr4 (23 HSPs)
chr4 (12-935)||(33620480-33621407)
chr4 (569-691)||(43793630-43793755)
chr4 (568-674)||(25011932-25012040)
chr4 (973-1013)||(33621445-33621485)
chr4 (597-674)||(19232370-19232450)
chr4 (568-691)||(36729087-36729212)
chr4 (570-676)||(4098852-4098960)
chr4 (569-691)||(20919334-20919458)
chr4 (597-676)||(13826447-13826528)
chr4 (564-633)||(35475285-35475354)
chr4 (597-676)||(13394563-13394645)
chr4 (597-676)||(13397702-13397784)
chr4 (569-633)||(43793871-43793935)
chr4 (569-633)||(55780386-55780450)
chr4 (569-633)||(55844566-55844630)
chr4 (578-633)||(6209482-6209537)
chr4 (570-633)||(9397430-9397493)
chr4 (596-682)||(15795506-15795593)
chr4 (567-675)||(24626219-24626328)
chr4 (570-633)||(25011735-25011798)
chr4 (596-665)||(45633642-45633714)
chr4 (602-676)||(4357447-4357523)
chr4 (596-633)||(4433424-4433460)
[»] chr8 (14 HSPs)
chr8 (597-691)||(8802427-8802524)
chr8 (597-682)||(23565278-23565366)
chr8 (596-676)||(1824799-1824880)
chr8 (596-676)||(1859244-1859325)
chr8 (576-633)||(3208220-3208277)
chr8 (569-675)||(18881503-18881611)
chr8 (592-633)||(21666514-21666555)
chr8 (566-676)||(5192268-5192380)
chr8 (569-676)||(21929846-21929956)
chr8 (596-665)||(17812964-17813034)
chr8 (559-633)||(44146961-44147035)
chr8 (596-633)||(8802640-8802677)
chr8 (596-633)||(12723502-12723539)
chr8 (596-633)||(19392807-19392844)
[»] chr7 (33 HSPs)
chr7 (570-676)||(15681825-15681934)
chr7 (596-676)||(19493513-19493594)
chr7 (569-678)||(24448044-24448153)
chr7 (576-664)||(3403058-3403148)
chr7 (596-676)||(9822128-9822209)
chr7 (596-676)||(10724053-10724134)
chr7 (597-691)||(13577814-13577910)
chr7 (597-691)||(31494090-31494187)
chr7 (568-661)||(25002917-25003011)
chr7 (596-633)||(39181963-39182000)
chr7 (596-633)||(43517153-43517190)
chr7 (597-676)||(11843205-11843287)
chr7 (596-682)||(6650699-6650788)
chr7 (597-691)||(17305945-17306042)
chr7 (564-674)||(48175956-48176070)
chr7 (559-633)||(23658763-23658836)
chr7 (568-691)||(19195212-19195337)
chr7 (596-633)||(20636645-20636682)
chr7 (596-633)||(20638517-20638554)
chr7 (566-676)||(27869192-27869304)
chr7 (596-633)||(42271359-42271396)
chr7 (568-665)||(39182140-39182239)
chr7 (568-691)||(42271512-42271638)
chr7 (583-691)||(5348208-5348314)
chr7 (569-676)||(21224353-21224461)
chr7 (568-653)||(5111628-5111716)
chr7 (559-633)||(6650533-6650607)
chr7 (583-633)||(48176203-48176253)
chr7 (597-679)||(9157058-9157141)
chr7 (596-633)||(17305790-17305827)
chr7 (596-633)||(24597756-24597793)
chr7 (596-652)||(26385480-26385539)
chr7 (598-676)||(33237444-33237522)
[»] chr2 (18 HSPs)
chr2 (564-691)||(30714269-30714398)
chr2 (597-674)||(25298828-25298908)
chr2 (569-676)||(18537828-18537937)
chr2 (597-676)||(2986881-2986963)
chr2 (597-676)||(9787754-9787834)
chr2 (561-633)||(11175898-11175970)
chr2 (569-633)||(25884177-25884241)
chr2 (598-633)||(12350251-12350286)
chr2 (569-620)||(32677815-32677866)
chr2 (583-633)||(4587873-4587923)
chr2 (559-633)||(18538069-18538143)
chr2 (596-633)||(2986712-2986749)
chr2 (568-633)||(6763958-6764023)
chr2 (596-633)||(9051268-9051305)
chr2 (596-633)||(15700773-15700810)
chr2 (596-633)||(26829326-26829363)
chr2 (596-633)||(38716220-38716257)
chr2 (568-633)||(43301655-43301719)
[»] chr1 (24 HSPs)
chr1 (559-676)||(24196456-24196576)
chr1 (569-665)||(16972057-16972155)
chr1 (567-676)||(4059519-4059631)
chr1 (576-662)||(21148156-21148245)
chr1 (571-674)||(43706655-43706761)
chr1 (597-676)||(48471890-48471972)
chr1 (567-633)||(14601733-14601799)
chr1 (604-665)||(46432250-46432314)
chr1 (604-674)||(2425421-2425493)
chr1 (578-634)||(9554209-9554265)
chr1 (569-633)||(18606924-18606988)
chr1 (569-633)||(28920892-28920956)
chr1 (604-674)||(51719157-51719229)
chr1 (598-633)||(43706894-43706929)
chr1 (561-619)||(2260369-2260427)
chr1 (596-665)||(2657539-2657611)
chr1 (559-621)||(24750022-24750084)
chr1 (583-633)||(50334731-50334781)
chr1 (596-633)||(3616825-3616862)
chr1 (576-617)||(4455048-4455089)
chr1 (596-633)||(17504986-17505023)
chr1 (596-633)||(28552589-28552626)
chr1 (596-633)||(31075567-31075604)
chr1 (596-633)||(46432457-46432494)
[»] chr6 (17 HSPs)
chr6 (602-691)||(34528328-34528419)
chr6 (569-691)||(18749096-18749220)
chr6 (569-680)||(3118870-3118982)
chr6 (596-633)||(31210820-31210857)
chr6 (576-691)||(14572184-14572302)
chr6 (597-676)||(18791552-18791634)
chr6 (571-633)||(4013906-4013968)
chr6 (596-664)||(9241859-9241928)
chr6 (559-662)||(26240166-26240272)
chr6 (564-682)||(32451915-32452036)
chr6 (597-676)||(34834120-34834201)
chr6 (568-633)||(2059061-2059126)
chr6 (596-633)||(16895467-16895504)
chr6 (596-633)||(18791384-18791421)
chr6 (596-633)||(24051035-24051072)
chr6 (596-633)||(25819711-25819748)
chr6 (596-633)||(26710548-26710585)
[»] chr5 (12 HSPs)
chr5 (569-676)||(2373340-2373450)
chr5 (567-676)||(16900994-16901106)
chr5 (597-676)||(25556903-25556984)
chr5 (569-630)||(20654038-20654099)
chr5 (564-676)||(31648179-31648294)
chr5 (569-674)||(31055314-31055421)
chr5 (571-617)||(4800935-4800981)
chr5 (597-676)||(18695198-18695279)
chr5 (568-633)||(8645795-8645860)
chr5 (596-633)||(18695030-18695067)
chr5 (596-633)||(23765630-23765667)
chr5 (596-633)||(23815478-23815515)
[»] scaffold0171 (1 HSPs)
scaffold0171 (596-680)||(9224-9311)
[»] chr3 (26 HSPs)
chr3 (569-633)||(40836419-40836483)
chr3 (560-664)||(32960635-32960740)
chr3 (596-691)||(20001889-20001986)
chr3 (583-691)||(23320540-23320651)
chr3 (604-665)||(28173763-28173827)
chr3 (597-676)||(26628052-26628134)
chr3 (569-633)||(33279825-33279889)
chr3 (569-633)||(36311151-36311214)
chr3 (597-675)||(13081090-13081171)
chr3 (583-665)||(40836193-40836276)
chr3 (583-633)||(10743422-10743472)
chr3 (559-633)||(26633350-26633423)
chr3 (568-676)||(3328811-3328922)
chr3 (596-633)||(4521980-4522017)
chr3 (596-633)||(25179604-25179641)
chr3 (560-676)||(28154872-28154991)
chr3 (569-633)||(26628266-26628330)
chr3 (598-633)||(3781119-3781154)
chr3 (596-676)||(46387608-46387690)
chr3 (602-632)||(3821124-3821154)
chr3 (570-653)||(4776037-4776122)
chr3 (596-633)||(3329054-3329091)
chr3 (604-665)||(10743613-10743677)
chr3 (596-633)||(22447985-22448022)
chr3 (596-633)||(28173970-28174007)
chr3 (596-633)||(48907532-48907569)
[»] scaffold0607 (1 HSPs)
scaffold0607 (568-676)||(2046-2158)
[»] scaffold0419 (1 HSPs)
scaffold0419 (597-676)||(2988-3069)
[»] scaffold0087 (2 HSPs)
scaffold0087 (597-676)||(24991-25073)
scaffold0087 (568-633)||(25205-25270)
[»] scaffold0002 (1 HSPs)
scaffold0002 (571-691)||(455207-455331)
[»] scaffold0291 (1 HSPs)
scaffold0291 (569-682)||(10110-10228)
[»] scaffold0406 (2 HSPs)
scaffold0406 (597-676)||(2186-2267)
scaffold0406 (596-633)||(2023-2060)
[»] scaffold0150 (1 HSPs)
scaffold0150 (597-674)||(6028-6107)
[»] scaffold0025 (2 HSPs)
scaffold0025 (567-633)||(61811-61877)
scaffold0025 (570-676)||(19477-19585)
[»] scaffold0062 (2 HSPs)
scaffold0062 (596-633)||(49685-49722)
scaffold0062 (596-633)||(62224-62261)


Alignment Details
Target: chr4 (Bit Score: 793; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 12 - 935
Target Start/End: Original strand, 33620480 - 33621407
Alignment:
Q  12 agcagagacggtcaccttcgcctaagcaagagtctctcggagtatgacttgcaggaactcaatgcttgttttgaacttgggtttgggtttgattcaccgg 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33620480 agcagagacggtcaccttcgcctaagcaagagtctatcggagtatgacctgcaggaactcaatgcttgttttgaacttgggtttgggtttgattcaccgg 33620579  T
Q  112 aaattgacccgaagctatcagatactttcccagctttggagttgtatcatgctgttaataaacaatatcataatcataacatgtcacgatcttcttcttc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33620580 aaattgacccgaagctatcagatactttcccagctttggagttgtatcatgttgttaataaacaatatcataatcataacatgtcacgatcttcttcttc 33620679  T
Q  212 atcttctattgtttctgatagtgacattgctaacaccacaaccatatttaatccaggtaactcaattcaaaaatgcgatcgtcacaatttaaatttttca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33620680 atcttctattgtttctgatagtgacattgctaacaccacaaccatatttaatccaggtaactcaattcaaaaacgcgatcgtcacaatttaaatttttca 33620779  T
Q  312 ttaaat---tagagttatgcaaattaaataatagttttgtcgttcagtcattaatatcaaaactataattgcttaaatttaatcaaacaataaaccaaac 408  Q
    ||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33620780 ttaaattagtagagttatgcaaattaaataatagttttgtcgttaagtcattaatatcaaaactataattgcttaaatttaatcaaacaataaaccaaac 33620879  T
Q  409 agttgagttcgggtggttaattatccgagttaggatgaaaggttcaagataatcaaattcaaattttagttgtaagaatccttgttcaggctttatcaca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  33620880 agttgagttcgggtggttaattatccgagttaggatgaaaggttcaagataatcaaattcaaattttagctataagaatccttgttcaggctttatcaca 33620979  T
Q  509 tcaaacttggattaccagactcctgagggttaagacgacaaatttcaataaataaa-tttaaggctagactgcatttttcgacgccttagttttaaaatg 607  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  33620980 tcaaacttggattaccagacccctgagggttaagacgacaaatttcaataaataaattttaaggttagactgcatttttcgacgcctaagttttaaaatg 33621079  T
Q  608 ttgcgattttggcctcctattaaaaagtacaattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaatttattttcaattttg 707  Q
    || |||||||| ||  ||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33621080 ttacgattttgaccctctattaaaaagtataattttggcccgtttcattccaaaattgatgagaagacgccacatcttccaaaatttattttcaattttg 33621179  T
Q  708 ttatgtagctgatgatttgcctgcgaagaagactcgtttgaaacaatgggcaaagatggttgcttgtgtggtgcgacaaacttctccatcatctgcttga 807  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33621180 ttatgtagctgatgatttgcctgcgaagaagactcgtttaaaacaatgggcaaagatggttgcttgtgtggtgcgacaaacttctccatcatctgcttca 33621279  T
Q  808 ggatcttctaacctagttgattgatactaccttctggcatctttgcacacacatgaagctcataggnnnnnnngagtgtttggactgaact-tgttctaa 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||    
T  33621280 ggatcttctaacctagttgattgatactaccttctggcatctttgcacacacatgaagctcatagg-aaaaaagagtgtttggactgaactgtgttctaa 33621378  T
Q  907 tttgttcatacatagtcatgtatgttctc 935  Q
    |||||||||||||||||||||||||||||    
T  33621379 tttgttcatacatagtcatgtatgttctc 33621407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 569 - 691
Target Start/End: Original strand, 43793630 - 43793755
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattg 665  Q
    |||||| |||||| |||||| | |||  ||||||||||||||||||||||||| |||||||||||  |   |||||||||||| |||| | |||||||||    
T  43793630 aggctaaactgcacttttcgccccctatgttttaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccatttcgtcccaaaattg 43793729  T
Q  666 attagaagacgtcacatcttccaaaa 691  Q
     | |||||||| ||||| | ||||||    
T  43793730 ctgagaagacgccacatgtcccaaaa 43793755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 568 - 674
Target Start/End: Complemental strand, 25012040 - 25011932
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag-ta-caattttggcccctttcattccaaaattg 665  Q
    ||||||| |||||| |||||| | |||  |||| | |||||||| ||||||||| |||||||||||  || |||||||||||||||||||||||||||||    
T  25012040 aaggctaaactgcacttttcgccccctatgtttcataatgttgcaattttggccccctattaaaaaaatagcaattttggcccctttcattccaaaattg 25011941  T
Q  666 attagaaga 674  Q
     | ||||||    
T  25011940 ctcagaaga 25011932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 973 - 1013
Target Start/End: Original strand, 33621445 - 33621485
Alignment:
Q  973 ggttactggattggttctaagtttactatacaaacataatg 1013  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33621445 ggttactggattggttctaagtttactatacaaacataatg 33621485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 674
Target Start/End: Original strand, 19232370 - 19232450
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaaga 674  Q
    |||||| |||||||| |||||||||||||||||||||  |   ||||||||||||||||||| ||||||||| | ||||||    
T  19232370 gttttataatgttgcaattttggcctcctattaaaaaaaatagcaattttggcccctttcatcccaaaattgctcagaaga 19232450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 568 - 691
Target Start/End: Original strand, 36729087 - 36729212
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag--tacaattttggcccctttcattccaaaattg 665  Q
    |||||||  ||||| |||| ||| ||| ||||| ||||||||| ||||||| || |||||||||||   || |||||||||||||||||| ||||||||     
T  36729087 aaggctaacctgcaattttggacccctaagtttcaaaatgttgtgattttgaccccctattaaaaaaattataattttggcccctttcatcccaaaatta 36729186  T
Q  666 attagaagacgtcacatcttccaaaa 691  Q
     | |||||||| ||||| | ||||||    
T  36729187 ctgagaagacgccacatgtcccaaaa 36729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 570 - 676
Target Start/End: Complemental strand, 4098960 - 4098852
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa--gtacaattttggcccctttcattccaaaattgat 667  Q
    ||||| |||||| |||| |||  || ||||||||||||||||||||||||||  ||||||||||   || |||| ||||||||||| | ||||||||||     
T  4098960 ggctaaactgcactttttgacctctaagttttaaaatgttgcgattttggccctctattaaaaaatttataattatggcccctttcgtcccaaaattgac 4098861  T
Q  668 tagaagacg 676  Q
     ||||||||    
T  4098860 gagaagacg 4098852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 569 - 691
Target Start/End: Original strand, 20919334 - 20919458
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaattga 666  Q
    |||||| |||||| |||||||| ||| ||||| ||||||||||||||||||    |||||  ||||| ||||||||||||   |||| | |||||||||     
T  20919334 aggctaaactgcacttttcgacccctaagtttcaaaatgttgcgattttggttctctattaaaaaaattacaattttggctagtttcgtcccaaaattgc 20919433  T
Q  667 ttagaagacgtcacatcttccaaaa 691  Q
    | |||||||||||||| | ||||||    
T  20919434 tgagaagacgtcacatgtcccaaaa 20919458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 13826447 - 13826528
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| ||||||||||||||||| || |||||||||||     ||||||||||||||||||| ||||||||| | ||||||||    
T  13826447 gtttaaaaatgttgcgattttgaccccctattaaaaaaatggcaattttggcccctttcatcccaaaattgctgagaagacg 13826528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 564 - 633
Target Start/End: Original strand, 35475285 - 35475354
Alignment:
Q  564 atttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||| |||||| ||| ||||||||| |  || |||||||||||||||||||||||||  |||||||||||    
T  35475285 attttaggctaaacttcatttttcgccctctaagttttaaaatgttgcgattttggctccctattaaaaa 35475354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 13394563 - 13394645
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||||||||| ||| |||||||||||  |   ||||||||||||| ||||| | ||||||| | ||||||||    
T  13394563 gttttaaaatgttgcgattttagccccctattaaaaaaaatgacaattttggcccccttcatccgaaaattgctgagaagacg 13394645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 13397702 - 13397784
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||||||||| ||| |||||||||||  |   ||||||||||||| ||||| | ||||||| | ||||||||    
T  13397702 gttttaaaatgttgcgattttagccccctattaaaaaaaatagcaattttggcccccttcatccgaaaattgctgagaagacg 13397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 43793935 - 43793871
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| || |||| | ||||| ||||| |||||||||||||||||||| |||||||||||    
T  43793935 aggctaaactccactttttgccgcctaagtttcaaaatgttgcgattttggccccctattaaaaa 43793871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Original strand, 55780386 - 55780450
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| ||||||||| | | | |||||| ||||||||||||||||||| |||||||||||    
T  55780386 aggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggccccctattaaaaa 55780450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Original strand, 55844566 - 55844630
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| ||||||||| | | | |||||| ||||||||||||||||||| |||||||||||    
T  55844566 aggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggccccctattaaaaa 55844630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 633
Target Start/End: Complemental strand, 6209537 - 6209482
Alignment:
Q  578 tgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||| |||| ||| ||| |||||||||||||||||||||||| | |||||||||||    
T  6209537 tgcacttttagacccctaagttttaaaatgttgcgattttggtcccctattaaaaa 6209482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 633
Target Start/End: Complemental strand, 9397493 - 9397430
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||| |||||  | ||| ||||||||||||||| |||||||||| |||||||||||    
T  9397493 ggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggccccctattaaaaa 9397430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 682
Target Start/End: Complemental strand, 15795593 - 15795506
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatta-aaaagtacaattttggcccctttcattccaaaattgattagaagacgtcacat 682  Q
    ||||| ||||| |||||||||||| ||||||||| |||| | | ||||| ||| ||||| | ||||||||||| |||||||| |||||    
T  15795593 agtttcaaaatattgcgattttggtctcctattaaaaaaatgcgattttagcctctttcgtcccaaaattgatgagaagacgccacat 15795506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 675
Target Start/End: Original strand, 24626219 - 24626328
Alignment:
Q  567 taaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaatt 664  Q
    |||||||| |||||| |||||| |  || ||||||||||||||||||||||| || ||||||  |||||  ||| |||||||||| ||| | ||||||||    
T  24626219 taaggctaaactgcacttttcgccctctaagttttaaaatgttgcgattttgacc-cctattaaaaaaatgacatttttggccccattcgtcccaaaatt 24626317  T
Q  665 gattagaagac 675  Q
    | | |||||||    
T  24626318 gttaagaagac 24626328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 633
Target Start/End: Original strand, 25011735 - 25011798
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| ||| || |||||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  25011735 ggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggccccctattaaaaa 25011798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 45633714 - 45633642
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattg 665  Q
    |||||||||||||||||||||| ||| |||||||||||  |   ||||||||||||||||  | |||||||||    
T  45633714 agttttaaaatgttgcgattttagccccctattaaaaaaaattgcaattttggccccttttgtcccaaaattg 45633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 4357523 - 4357447
Alignment:
Q  602 aaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||||| || |||||||||||     ||||||||||||| ||||||| ||||||| | ||||||||    
T  4357523 aaaatgttgcgattttgaccccctattaaaaaaatggcaattttggcccccttcattctaaaattgctgagaagacg 4357447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 4433460 - 4433424
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4433460 agttttaaaatgttgcgattttggcc-cctattaaaaa 4433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 597 - 691
Target Start/End: Original strand, 8802427 - 8802524
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    ||||||||||||||||||||||||| |||||||||||  |   ||||||||||||| ||||| ||||||||| | |||||||| ||||| ||||||||    
T  8802427 gttttaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccccttcatcccaaaattgctgagaagacgccacatgttccaaaa 8802524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 682
Target Start/End: Complemental strand, 23565366 - 23565278
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacgtcacat 682  Q
    ||||||||||||||| |||||| || |||||||||||  |   ||||||||||||||||||| | ||||||| | |||||||| |||||    
T  23565366 gttttaaaatgttgcaattttgaccccctattaaaaaaaatgacaattttggcccctttcatccaaaaattgctgagaagacgccacat 23565278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 676
Target Start/End: Complemental strand, 1824880 - 1824799
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatta-aaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||||||||||||||  ||||||||| ||||||| ||||  |||||||||||||||||| |  |||||||| | ||||||||    
T  1824880 agttttaaaatgttgtaattttggccccctattaaaaaaagacaattttggcccctttcgtctcaaaattgttgagaagacg 1824799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 676
Target Start/End: Complemental strand, 1859325 - 1859244
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatta-aaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||||||||||||||  ||||||||| ||||||| ||||  |||||||||||||||||| |  |||||||| | ||||||||    
T  1859325 agttttaaaatgttgtaattttggccccctattaaaaaaagacaattttggcccctttcgtctcaaaattgttgagaagacg 1859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 576 - 633
Target Start/End: Complemental strand, 3208277 - 3208220
Alignment:
Q  576 actgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| |||||||| ||| |||||||||| ||||||||||| |||||||||| ||||    
T  3208277 actgcacttttcgacccctaagttttaaaaagttgcgattttagcctcctatttaaaa 3208220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 569 - 675
Target Start/End: Original strand, 18881503 - 18881611
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattga 666  Q
    |||||| |||||  |||||||| | | |||||| ||||||||||||||||||| |||||||||||     ||||||||||||| ||| | |||||||||     
T  18881503 aggctaaactgcgcttttcgacccttaagttttgaaatgttgcgattttggccccctattaaaaaaatggcaattttggcccccttcgtcccaaaattgt 18881602  T
Q  667 ttagaagac 675  Q
    | |||||||    
T  18881603 tgagaagac 18881611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 21666555 - 21666514
Alignment:
Q  592 ccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  21666555 ccttagtttcaaaatgttgcgattttggccccctattaaaaa 21666514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 566 - 676
Target Start/End: Original strand, 5192268 - 5192380
Alignment:
Q  566 ttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaa-aagta-caattttggcccctttcattccaaaat 663  Q
    ||||||||| ||| || |||||| | |||  |||| |||||||||| ||||||||| ||||||||| || || |||||||||||||||| || | |||||    
T  5192268 ttaaggctaaacttcacttttcgccccctatgtttcaaaatgttgcaattttggccccctattaaataaatagcaattttggccccttttatccaaaaat 5192367  T
Q  664 tgattagaagacg 676  Q
    || | ||||||||    
T  5192368 tgctgagaagacg 5192380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 676
Target Start/End: Original strand, 21929846 - 21929956
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattg 665  Q
    |||||| | ||||||||||| | |||  |||| |||| ||||||||||||||  |||||||||||  |   ||||||||||||| ||||| |||||||||    
T  21929846 aggctaaagtgcatttttcgccccctatgtttcaaaacgttgcgattttggctccctattaaaaaaaattgcaattttggcccccttcatcccaaaattg 21929945  T
Q  666 attagaagacg 676  Q
     | ||||||||    
T  21929946 ctgagaagacg 21929956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 665
Target Start/End: Original strand, 17812964 - 17813034
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaaattg 665  Q
    |||||||||||||| |||||||| |||||||||||||| |   || |||| |||||||| |||||||||||    
T  17812964 agttttaaaatgttccgattttgacctcctattaaaaaatggtaactttgacccctttcgttccaaaattg 17813034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 44146961 - 44147035
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||||||||| ||| || |||||| |  |  ||||| |||||||||||||||||||| |||||||||||    
T  44146961 aataaaattaaggctaaacttcacttttcgccctccaagtttcaaaatgttgcgattttggccccctattaaaaa 44147035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 8802677 - 8802640
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  8802677 agtttcaaaatgttgcgattttggccccctattaaaaa 8802640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 12723539 - 12723502
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  12723539 agtttcaaaatgttgcgattttggccccctattaaaaa 12723502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 19392844 - 19392807
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  19392844 agtttcaaaatgttgcgattttggccccctattaaaaa 19392807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 7e-18; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 570 - 676
Target Start/End: Complemental strand, 15681934 - 15681825
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt---aaaaagtacaattttggcccctttcattccaaaattga 666  Q
    ||||| |||||| |||| ||| ||| ||||| ||||||||||||||||||||||||| |   ||||| ||||||||||||||||||| | |||||||| |    
T  15681934 ggctaaactgcacttttagacccctaagtttcaaaatgttgcgattttggcctcctaataaaaaaaattacaattttggcccctttcgtcccaaaattta 15681835  T
Q  667 ttagaagacg 676  Q
    | ||||||||    
T  15681834 tgagaagacg 15681825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 596 - 676
Target Start/End: Complemental strand, 19493594 - 19493513
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagta-caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||| ||||||| | | ||||||||    
T  19493594 agttttaaaatgttgcgattttgaccccctattaaaaaatagcaattttggcccctttcatcccaaaatggctgagaagacg 19493513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 569 - 678
Target Start/End: Original strand, 24448044 - 24448153
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagtacaattttggcccctttcattccaaaattgatt 668  Q
    |||||| |||||| |||||| | ||  |||||||||||||||||||||||  | ||||||||||| | | ||||||| ||||||| ||||||||||| |     
T  24448044 aggctaaactgcacttttcgccccccaagttttaaaatgttgcgattttgatcccctattaaaaaatgcgattttggtccctttcgttccaaaattgctg 24448143  T
Q  669 agaagacgtc 678  Q
    ||||||||||    
T  24448144 agaagacgtc 24448153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 576 - 664
Target Start/End: Original strand, 3403058 - 3403148
Alignment:
Q  576 actgcatttttcgacgcctt-agttttaaaatgttgcgattttggcctcctatt-aaaaagtacaattttggcccctttcattccaaaatt 664  Q
    |||||| |||||||| || | ||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| | ||||||||    
T  3403058 actgcacttttcgaccccctgagttttaaaatgttgcgattttgaccccctattaaaaaattacaattttggcccctttcgtcccaaaatt 3403148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 596 - 676
Target Start/End: Original strand, 9822128 - 9822209
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatt-aaaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||| | ||||||||    
T  9822128 agtttcaaaaagttgcgattttggcctcctattaaaaaattacaattttagcccctttcgtcccaaaattgctgagaagacg 9822209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 596 - 676
Target Start/End: Original strand, 10724053 - 10724134
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatt-aaaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||| |||| |||||||||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||| | ||||||||    
T  10724053 agtttcaaaaagttgcgattttggcctcctattaaaaaattacaattttagcccctttcgtcccaaaattgctgagaagacg 10724134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 597 - 691
Target Start/End: Original strand, 13577814 - 13577910
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    |||| |||||||||||||||||||| |||||||||||     ||||||||||||||||||| ||||||||| | |||||||| ||| | ||||||||    
T  13577814 gtttcaaaatgttgcgattttggccccctattaaaaaaatggcaattttggcccctttcatcccaaaattgctgagaagacgccacgtgttccaaaa 13577910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 31494187 - 31494090
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    |||| |||||||||||||||||||| |||||||||||  |   ||||||||||||||||||| | ||||||| | |||||||| ||| | ||||||||    
T  31494187 gtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccctttcatcctaaaattgctgagaagacgccacgtgttccaaaa 31494090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 568 - 661
Target Start/End: Complemental strand, 25003011 - 25002917
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaa 661  Q
    ||||||| |||| | |||||| | ||| |||||||||||||||||||||||| | | ||||||||| | ||||||||||||||||| || |||||    
T  25003011 aaggctaaactgtacttttcgccccctaagttttaaaatgttgcgattttggtcccttattaaaaaatgacaattttggccccttttatcccaaa 25002917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 39181963 - 39182000
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39181963 agttttaaaatgttgcgattttggcctcctattaaaaa 39182000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 43517190 - 43517153
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43517190 agttttaaaatgttgcgattttggcctcctattaaaaa 43517153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 11843205 - 11843287
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||||||||||||  |||||||||||  |   ||||||||||||||||||| ||||||||| | ||||||||    
T  11843205 gtttcaaaatgttgcgattttggctccctattaaaaaaaatggcaattttggcccctttcatcccaaaattgctgagaagacg 11843287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 596 - 682
Target Start/End: Complemental strand, 6650788 - 6650699
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacgtcacat 682  Q
    |||||||||||||||||||| ||| | | ||||||||| ||   ||||||| ||||||||| | ||||||||||| |||||||| |||||    
T  6650788 agttttaaaatgttgcgattgtggtcccttattaaaaaatatgacaattttagcccctttcgtcccaaaattgatgagaagacgccacat 6650699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 17306042 - 17305945
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    ||||||||||||||| ||||||||| | | |||||||  |   ||||||||| ||||||||| ||||||||||| |||||||| ||||| | ||||||    
T  17306042 gttttaaaatgttgcaattttggcccctttttaaaaaaaatgacaattttgggccctttcatcccaaaattgatgagaagacgccacatgtcccaaaa 17305945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 48175956 - 48176070
Alignment:
Q  564 atttaaggctagactgca-tttttcgacgccttagttttaaaatgttgcgattttggcctcctatta--aaaagta-caattttggcccctttcattcca 659  Q
    |||| |||||| |||||| ||||||| | |||  |||| | |||||||||||||||||| |||||||  |||| || ||||||||||||||||||| |||    
T  48175956 attttaggctaaactgcactttttcgccccctatgtttcataatgttgcgattttggccccctattagaaaaaatagcaattttggcccctttcatccca 48176055  T
Q  660 aaattgattagaaga 674  Q
    |||||| | ||||||    
T  48176056 aaattgctcagaaga 48176070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 23658763 - 23658836
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| | |||| || |||||| |||||||  ||| ||||||||||||||||||||||||||| ||||||||||    
T  23658763 aataaaataaaggttaaactgcacttttcgatccctaagttttaaaatgttgcgattttggcct-ctattaaaaa 23658836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 568 - 691
Target Start/End: Original strand, 19195212 - 19195337
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag-ta-caattttggcccctttcattccaaaattg 665  Q
    ||||||| ||||||||||||  | |||  |||| ||||| |||| ||||||| | |||||||||||  || ||||||||||||||||||| | |||||||    
T  19195212 aaggctaaactgcatttttcaccccctatgtttcaaaatattgcaattttggtcccctattaaaaaaatagcaattttggcccctttcatccaaaaattg 19195311  T
Q  666 attagaagacgtcacatcttccaaaa 691  Q
     | |||||||| ||||| | ||||||    
T  19195312 ttgagaagacgccacatgtcccaaaa 19195337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 20636645 - 20636682
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20636645 agttttaaaatgttgcgattttggccccctattaaaaa 20636682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 20638517 - 20638554
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20638517 agttttaaaatgttgcgattttggccccctattaaaaa 20638554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 566 - 676
Target Start/End: Original strand, 27869192 - 27869304
Alignment:
Q  566 ttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaat 663  Q
    ||||||||| | |||| |||||| | |||  |||| ||||||||||||||||| || ||||||  |||||  |||||||||||| | ||||| |||||||    
T  27869192 ttaaggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttgaccccctattaaaaaaatgacaattttggcctccttcatcccaaaat 27869291  T
Q  664 tgattagaagacg 676  Q
    || | ||||||||    
T  27869292 tgctgagaagacg 27869304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 42271359 - 42271396
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42271359 agtttcaaaatgttgcgattttggcctcctattaaaaa 42271396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 568 - 665
Target Start/End: Complemental strand, 39182239 - 39182140
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatta--aaaagtacaattttggcccctttcattccaaaattg 665  Q
    ||||||| |||||| |||||| | ||| ||||| |||||||||| |||||| || |||||||  ||||  |||||||||||||||||  | |||||||||    
T  39182239 aaggctaaactgcacttttcgccccctaagtttaaaaatgttgcaattttgaccccctattaaaaaaatgacaattttggccccttttgtcccaaaattg 39182140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 568 - 691
Target Start/End: Complemental strand, 42271638 - 42271512
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaatt 664  Q
    ||||||| | |||| |||||| | |||  ||||||||||||||| ||||| ||| |||||||||||  |   ||||||||||||| ||||| | ||||||    
T  42271638 aaggctaaagtgcacttttcgccccctatgttttaaaatgttgcaatttttgccccctattaaaaaaaatgacaattttggcccccttcatccgaaaatt 42271539  T
Q  665 gattagaagacgtcacatcttccaaaa 691  Q
    | | |||||||| ||| | ||||||||    
T  42271538 gctgagaagacgccacgtgttccaaaa 42271512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 691
Target Start/End: Complemental strand, 5348314 - 5348208
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaaattgattagaagacgtcaca 681  Q
    |||||| | ||| ||||||||||||||| ||||||||||    |||||||| | ||||||||| || ||||| | ||||||||| | |||||||||||||    
T  5348314 ttttcgtcccctaagttttaaaatgttgtgattttggccc---attaaaaaatgacaattttgacctctttcgtcccaaaattgctgagaagacgtcaca 5348218  T
Q  682 tcttccaaaa 691  Q
    | | ||||||    
T  5348217 tatcccaaaa 5348208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 676
Target Start/End: Original strand, 21224353 - 21224461
Alignment:
Q  569 aggctagactgcatttttcgacgcctta-gttttaaaatgttgcgattttggcctcctattaaaaag-ta-caattttggcccctttcattccaaaattg 665  Q
    |||||| ||||||||||||| |  |||| |||| |||||||||| ||||||| | |||||||||||  || ||||||||||||||||||| | |||||||    
T  21224353 aggctaaactgcatttttcgcc--cttatgtttcaaaatgttgcaattttggtcccctattaaaaaaatagcaattttggcccctttcatccaaaaattg 21224450  T
Q  666 attagaagacg 676  Q
     | ||||||||    
T  21224451 ctgagaagacg 21224461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 568 - 653
Target Start/End: Complemental strand, 5111716 - 5111628
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt---aaaaagtacaattttggcccctttc 653  Q
    ||||||| ||| || |||| ||| ||| |||||||||| ||||||||||| |||  |||||   ||||| |||||||||||||||||||    
T  5111716 aaggctaaactacactttttgacccctaagttttaaaaagttgcgatttttgccctctattaaaaaaaattacaattttggcccctttc 5111628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 6650533 - 6650607
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||  ||||||| |||||| | |||| | ||| ||||||||||| |||||||||||||| | |||||||||    
T  6650533 aataaatagaaggctaaactgcactgttcgccccctaagttttaaaattttgcgattttggccccttattaaaaa 6650607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 583 - 633
Target Start/End: Complemental strand, 48176253 - 48176203
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  48176253 ttttcgccccctaagtttcaaaatgttgcgattttggccccctattaaaaa 48176203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 679
Target Start/End: Original strand, 9157058 - 9157141
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaattgattagaagacgtca 679  Q
    ||||||||||||||||||||||||| ||||||  |||||  |||||||||| | ||||| |  |||||||| | |||||||||||    
T  9157058 gttttaaaatgttgcgattttggcc-cctattaaaaaaatgacaattttggtctctttcgtctcaaaattgctgagaagacgtca 9157141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 17305790 - 17305827
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  17305790 agtttcaaaatgttgcgattttggccccctattaaaaa 17305827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 24597793 - 24597756
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  24597793 agttttaaaatgttgcgattttgtccccctattaaaaa 24597756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 652
Target Start/End: Complemental strand, 26385539 - 26385480
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctat---taaaaagtacaattttggccccttt 652  Q
    ||||| |||||||||||||||||||| |||||   ||||||  |||||||||||||||||    
T  26385539 agtttcaaaatgttgcgattttggccccctatttataaaaatgacaattttggccccttt 26385480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 676
Target Start/End: Original strand, 33237444 - 33237522
Alignment:
Q  598 ttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||||||| ||||||||| ||||||||| | ||||||||    
T  33237444 ttttaaaatgttgcgattttggtct-ctattaaaaaaattgcaattttgg-ccctttcatcccaaaattgctgagaagacg 33237522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 564 - 691
Target Start/End: Original strand, 30714269 - 30714398
Alignment:
Q  564 atttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaa 661  Q
    |||| |||||| | |||| |||||| | |||  ||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||| |||||    
T  30714269 attttaggctaaagtgcacttttcgccccctatgttttaaaatgttgcgattttggccccctattaaaaaaatggcaattttggcccctttcatcccaaa 30714368  T
Q  662 attgattagaagacgtcacatcttccaaaa 691  Q
    |||| | |||||||| ||||| | ||||||    
T  30714369 attgctgagaagacgccacatgtcccaaaa 30714398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 597 - 674
Target Start/End: Original strand, 25298828 - 25298908
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaaga 674  Q
    |||||||||||||||||||||||||||||||||||||  |   ||||||||||||| ||||| ||||||||| | ||||||    
T  25298828 gttttaaaatgttgcgattttggcctcctattaaaaaaaattgcaattttggcccccttcatcccaaaattgttgagaaga 25298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 569 - 676
Target Start/End: Original strand, 18537828 - 18537937
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt-aaaaagta-caattttggcccctttcattccaaaattga 666  Q
    |||||| |||||| |||||| | |||  ||||||||||||||| ||||||| | |||||| ||||| || ||||||||||||||||||| | |||||||     
T  18537828 aggctaaactgcacttttcgtcccctatgttttaaaatgttgcaattttggtcccctattaaaaaaatagcaattttggcccctttcatccaaaaattgc 18537927  T
Q  667 ttagaagacg 676  Q
    | ||||||||    
T  18537928 tgagaagacg 18537937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 2986963 - 2986881
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||||||||||||| |||||||||||  |   ||||||||||||| ||||| ||||||||| | ||||||||    
T  2986963 gtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccccttcatcccaaaattgctgagaagacg 2986881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 9787834 - 9787754
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| ||||| |||| ||||||||| ||||||||||| | |||||||||||||||||||| | ||||||| | ||||||||    
T  9787834 gtttcaaaatattgcaattttggccccctattaaaaaatgacaattttggcccctttcatccaaaaattgctgagaagacg 9787754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 633
Target Start/End: Original strand, 11175898 - 11175970
Alignment:
Q  561 taaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||| ||| || |||||| |  || ||||| |||||||||||||||||||| |||||||||||    
T  11175898 taaatttaaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaa 11175970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 633
Target Start/End: Original strand, 25884177 - 25884241
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||||||  ||||| | ||| |||||||||||||||||||||||||| |||||||||||    
T  25884177 aggctaaactgcacatttcgccccctaagttttaaaatgttgcgattttggccccctattaaaaa 25884241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 598 - 633
Target Start/End: Complemental strand, 12350286 - 12350251
Alignment:
Q  598 ttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||||||||||||||    
T  12350286 ttttaaaatgttgcgattttggcctcctattaaaaa 12350251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 620
Target Start/End: Original strand, 32677815 - 32677866
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggc 620  Q
    |||||| | ||||||||||| | ||| |||||||||||||||||||||||||    
T  32677815 aggctaaagtgcatttttcgcctcctaagttttaaaatgttgcgattttggc 32677866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 583 - 633
Target Start/End: Original strand, 4587873 - 4587923
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  4587873 ttttcgccccctaagtttcaaaatgttgcgattttggccccctattaaaaa 4587923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 633
Target Start/End: Complemental strand, 18538143 - 18538069
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| | |||||| ||| || |||||| |  || ||||| |||||||||||||||||||| |||||||||||    
T  18538143 aataaatgttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaa 18538069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 2986712 - 2986749
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  2986712 agtttcaaaatgttgcgattttggccccctattaaaaa 2986749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 6764023 - 6763958
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| ||| ||||||||| |  || ||||| |||||||||||||||||| | |||||||||||    
T  6764023 aaggctaaacttcatttttcgccctctaagtttcaaaatgttgcgattttggtcccctattaaaaa 6763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 9051305 - 9051268
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  9051305 agttttaaaatgttgcgattttgaccccctattaaaaa 9051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 15700773 - 15700810
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||| | |||||||||||    
T  15700773 agttttaaaatgttgcgattttggacccctattaaaaa 15700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 26829363 - 26829326
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  26829363 agttttaaaatgttgcgattttggccccctatgaaaaa 26829326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 38716220 - 38716257
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  38716220 agttttaaaatgttgcgattttgaccccctattaaaaa 38716257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Original strand, 43301655 - 43301719
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| ||||||||||||| | | | |||||  |||||||||||||||||||| ||||||||||    
T  43301655 aaggctaaactgcatttttcgcctcttaagtttcgaaatgttgcgattttggcct-ctattaaaaa 43301719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 559 - 676
Target Start/End: Complemental strand, 24196576 - 24196456
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcat 655  Q
    |||| ||||||||||| |||||| |||||| | |||  ||||||||||||||||||||||||| |||||||||||  |   ||||||||||||||||| |    
T  24196576 aatatatttaaggctaaactgcacttttcgcctcctatgttttaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccctttcgt 24196477  T
Q  656 tccaaaattgattagaagacg 676  Q
     | ||||||| | ||||||||    
T  24196476 ccaaaaattgctgagaagacg 24196456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 569 - 665
Target Start/End: Complemental strand, 16972155 - 16972057
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatta--aaaagtacaattttggcccctttcattccaaaattg 665  Q
    |||||| |||||| |||||| | ||| |||||||||||||||||||||| ||| |||||||  ||||  ||||||||||||| |||| |||||||||||    
T  16972155 aggctaaactgcacttttcgccccctaagttttaaaatgttgcgattttagccccctattaaaaaaatgacaattttggcccatttcgttccaaaattg 16972057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 567 - 676
Target Start/End: Original strand, 4059519 - 4059631
Alignment:
Q  567 taaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaat 663  Q
    |||||||| | |||| |||||| | |||  |||| |||||||||||||||||||| |||||||||||  |   ||||||||||||||||||| |||||||    
T  4059519 taaggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttggccccctattaaaaaaaattgcaattttggcccctttcatcccaaaat 4059618  T
Q  664 tgattagaagacg 676  Q
    || | ||||||||    
T  4059619 tgctgagaagacg 4059631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 662
Target Start/End: Complemental strand, 21148245 - 21148156
Alignment:
Q  576 actgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatta---aaaagtacaattttggcccctttcattccaaaa 662  Q
    |||||| |||||||| ||| | |||||||||||||||||||||||| |||||||   |||| ||||||| ||||||||||| | ||||||    
T  21148245 actgcacttttcgacccctaaattttaaaatgttgcgattttggccccctattaaaaaaaattacaattatggcccctttcgtcccaaaa 21148156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 674
Target Start/End: Original strand, 43706655 - 43706761
Alignment:
Q  571 gctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgat 667  Q
    |||| |||||| |||||| | |||  |||| | |||||||||||||||||| |||||||||||  |   ||||||||||||||||||| ||||||||| |    
T  43706655 gctaaactgcacttttcgccccctatgtttcataatgttgcgattttggccccctattaaaaaaaatagcaattttggcccctttcatcccaaaattgct 43706754  T
Q  668 tagaaga 674  Q
     ||||||    
T  43706755 cagaaga 43706761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 48471890 - 48471972
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||||||||||||| |||||||||||  |   ||||||||||||| ||||| ||||||||| | ||||||||    
T  48471890 gtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccccttcatcccaaaattgctgagaagacg 48471972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 567 - 633
Target Start/End: Complemental strand, 14601799 - 14601733
Alignment:
Q  567 taaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||| ||||| ||||||  | ||| ||||||||||||||||||||||| || |||||||||||    
T  14601799 taaggctaaactgcgtttttcaccccctaagttttaaaatgttgcgattttgaccccctattaaaaa 14601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 604 - 665
Target Start/End: Original strand, 46432250 - 46432314
Alignment:
Q  604 aatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattg 665  Q
    |||||||||||||||||| |||||||||||  |   ||||||||||||||||||| |||||||||    
T  46432250 aatgttgcgattttggccccctattaaaaaaaatagcaattttggcccctttcatcccaaaattg 46432314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 604 - 674
Target Start/End: Complemental strand, 2425493 - 2425421
Alignment:
Q  604 aatgttgcgattttggcctcctatta-aaaagta-caattttggcccctttcattccaaaattgattagaaga 674  Q
    |||||||||||||||||| ||||||| |||| || |||||||||||| |||||| ||||||||| | ||||||    
T  2425493 aatgttgcgattttggccccctattaaaaaaatagcaattttggcccatttcatcccaaaattgctcagaaga 2425421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 578 - 634
Target Start/End: Original strand, 9554209 - 9554265
Alignment:
Q  578 tgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag 634  Q
    ||||||||| | | ||| ||||| |||||||| ||||||||||||||||||||||||    
T  9554209 tgcattttttgtctcctaagtttcaaaatgtttcgattttggcctcctattaaaaag 9554265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 18606988 - 18606924
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| || |||||||| ||| ||||||||||||||| ||||||| || |||||||||||    
T  18606988 aggctaaactacacttttcgacccctaagttttaaaatgttgtgattttgaccccctattaaaaa 18606924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 28920956 - 28920892
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| || |||||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  28920956 aggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggccccctattaaaaa 28920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 604 - 674
Target Start/End: Original strand, 51719157 - 51719229
Alignment:
Q  604 aatgttgcgattttggcctcctattaaaaag-ta-caattttggcccctttcattccaaaattgattagaaga 674  Q
    |||||||| ||||||||| |||||||||||  || ||||||||| ||||||||||||||||||| | ||||||    
T  51719157 aatgttgcaattttggccccctattaaaaaaatagcaattttggtccctttcattccaaaattgctcagaaga 51719229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 633
Target Start/End: Complemental strand, 43706929 - 43706894
Alignment:
Q  598 ttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||| |||||||||||    
T  43706929 ttttaaaatgttgcgattttggccccctattaaaaa 43706894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 2260369 - 2260427
Alignment:
Q  561 taaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttgg 619  Q
    |||||||| ||||| | |||| |||||||| | | ||||||||||||||||||||||||    
T  2260369 taaatttatggctaaagtgcacttttcgacccttaagttttaaaatgttgcgattttgg 2260427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 596 - 665
Target Start/End: Original strand, 2657539 - 2657611
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattg 665  Q
    |||||||||||||||||||||| ||| |||||||||||  |   ||||||||||||||||  | |||||||||    
T  2657539 agttttaaaatgttgcgattttagccccctattaaaaaaaattgcaattttggccccttttgtcccaaaattg 2657611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 559 - 621
Target Start/End: Complemental strand, 24750084 - 24750022
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcc 621  Q
    |||| ||||||||||| |||||| |||||| | |||  ||||||||||||||| |||||||||    
T  24750084 aatagatttaaggctaaactgcacttttcgccccctatgttttaaaatgttgcaattttggcc 24750022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 583 - 633
Target Start/End: Original strand, 50334731 - 50334781
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| | ||| |||||||||||||||| ||||||||| |||||||||||    
T  50334731 ttttcgccccctaagttttaaaatgttgcaattttggccccctattaaaaa 50334781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 3616825 - 3616862
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  3616825 agtttcaaaatgttgcgattttggccccctattaaaaa 3616862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 617
Target Start/End: Original strand, 4455048 - 4455089
Alignment:
Q  576 actgcatttttcgacgccttagttttaaaatgttgcgatttt 617  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  4455048 actgcacttttcgacccctaagttttaaaatgttgcgatttt 4455089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 17504986 - 17505023
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  17504986 agttttaaaatgttgcgattttgacatcctattaaaaa 17505023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 28552626 - 28552589
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  28552626 agttttaaaatgttgtgattttggccccctattaaaaa 28552589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 31075567 - 31075604
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  31075567 agttttaaaatgttgcgattttggtttcctattaaaaa 31075604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 46432494 - 46432457
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  46432494 agtttcaaaatgttgcgattttggccccctattaaaaa 46432457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 691
Target Start/End: Complemental strand, 34528419 - 34528328
Alignment:
Q  602 aaaatgttgcgattttggcctcctatta--aaaagtacaattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||||||||| | ||||||||| | ||||||| |||||| | ||||||    
T  34528419 aaaatgttgcgattttggcctcctattaaaaaaatgacaattttggcccctttcgtcccaaaattgctgagaagacatcacatgtcccaaaa 34528328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 569 - 691
Target Start/End: Original strand, 18749096 - 18749220
Alignment:
Q  569 aggctagactgcatttttcgacgcctta-gttttaaaatgttgcgattttggcctcctatt-aaaaagta-caattttggcccctttcattccaaaattg 665  Q
    |||||| |||||| |||||| | ||||| ||||||||||||||| ||||||||| |||||| ||||| || ||||||||||||||||||| | |||||||    
T  18749096 aggctaaactgcacttttcgcc-ccttatgttttaaaatgttgcaattttggccccctattaaaaaaatagcaattttggcccctttcatacaaaaattg 18749194  T
Q  666 attagaagacgtcacatcttccaaaa 691  Q
    || |||||| | ||||| | ||||||    
T  18749195 ataagaagaagccacatgtcccaaaa 18749220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 569 - 680
Target Start/End: Complemental strand, 3118982 - 3118870
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaaattgat 667  Q
    |||||| |||||| |||||| | |||  |||| | ||||||  |||||||||| ||| ||||||| | |||||||||||||||||||| |||||||||||    
T  3118982 aggctaaactgcacttttcgccccctatgtttcataatgttatgattttggccccctgttaaaaaattacaattttggcccctttcatcccaaaattgat 3118883  T
Q  668 tagaagacgtcac 680  Q
     |||||| |||||    
T  3118882 cagaagatgtcac 3118870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 31210820 - 31210857
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31210820 agttttaaaatgttgcgattttggcctcctattaaaaa 31210857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 691
Target Start/End: Original strand, 14572184 - 14572302
Alignment:
Q  576 actgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaa 672  Q
    |||||| |||||| | |||  ||||||||||||||| ||||||||| |||||||||||  |   ||||||||||||||||||| | ||||||| | ||||    
T  14572184 actgcacttttcgccccctatgttttaaaatgttgcaattttggccccctattaaaaaaaatagcaattttggcccctttcatccaaaaattgctgagaa 14572283  T
Q  673 gacgtcacatcttccaaaa 691  Q
    || | ||||| | ||||||    
T  14572284 gatgccacatgtcccaaaa 14572302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 18791634 - 18791552
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||||||||||||| |||||| ||||  |   ||||||||||||| ||||| ||||||||| | ||||||||    
T  18791634 gttttaaaatgttgcgattttggccccctatttaaaaaaatggcaattttggcccccttcatcccaaaattgttgagaagacg 18791552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 571 - 633
Target Start/End: Complemental strand, 4013968 - 4013906
Alignment:
Q  571 gctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||| |||||| |||||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  4013968 gctaaactgcacttttcgtcccctaagtttcaaaatgttgcgattttggccccctattaaaaa 4013906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 664
Target Start/End: Complemental strand, 9241928 - 9241859
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaagt-acaattttggcccctttcattccaaaatt 664  Q
    ||||||||||||||||||||||| || | ||||||||| | | || |||| |||||||||||||||||||    
T  9241928 agttttaaaatgttgcgattttgaccccttattaaaaaatgataaatttgacccctttcattccaaaatt 9241859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 559 - 662
Target Start/End: Complemental strand, 26240272 - 26240166
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag---tacaattttggcccctttcat 655  Q
    ||||||||| |||||| |||||| ||||||||   | || || ||| |||||||||||||| | |||||||||||    |||||||||||||| |||| |    
T  26240272 aataaattttaggctaaactgcacttttcgactattaaggttcaaagtgttgcgattttggtcccctattaaaaaaatttacaattttggcccatttcgt 26240173  T
Q  656 tccaaaa 662  Q
    |||||||    
T  26240172 tccaaaa 26240166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 682
Target Start/End: Complemental strand, 32452036 - 32451915
Alignment:
Q  564 atttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaa 660  Q
    |||| |||||| |||||| |||| | | |||  |||| |||||||||| |||||| || |||||||||||  |   ||||||||||||||||||| | ||    
T  32452036 attttaggctaaactgcactttttgtcccctatgtttcaaaatgttgcaattttgaccccctattaaaaaaaaaaacaattttggcccctttcatccaaa 32451937  T
Q  661 aattgattagaagacgtcacat 682  Q
    ||||| | |||||||| |||||    
T  32451936 aattgttgagaagacgccacat 32451915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 34834201 - 34834120
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||||||||| ||||||||||| ||||||||||||||     ||||||||||||  ||||| ||||||||| | ||||||||    
T  34834201 gttttaaaatattgcgattttgacctcctattaaaaaaatggcaattttggcccacttcatcccaaaattgctgagaagacg 34834120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 2059126 - 2059061
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| | |||||||||||   ||| | ||||||||||||||||||||| || |||||||||||    
T  2059126 aaggctaaattgcatttttcgctccctaaattttaaaatgttgcgattttgaccccctattaaaaa 2059061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 16895467 - 16895504
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  16895467 agttttaaaatgttgtgattttggccttctattaaaaa 16895504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 18791384 - 18791421
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  18791384 agttttaaaatgttgcgattttggccctctattaaaaa 18791421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 24051035 - 24051072
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  24051035 agtttcaaaatgttgcgattttggccccctattaaaaa 24051072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 25819711 - 25819748
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  25819711 agttttaaaatgttgcaattttggccccctattaaaaa 25819748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 26710585 - 26710548
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  26710585 agtttcaaaatgttgcgattttggccccctattaaaaa 26710548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 569 - 676
Target Start/End: Complemental strand, 2373450 - 2373340
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt---aaaaagtacaattttggcccctttcattccaaaattg 665  Q
    |||||| |||||| ||||| || ||| ||||| |||| ||||||||||||||||||||||   |||||| ||||||||||||||| || | |||||||||    
T  2373450 aggctaaactgcacttttcaacccctaagtttcaaaaagttgcgattttggcctcctatttaaaaaaaggacaattttggcccctgtcgtcccaaaattg 2373351  T
Q  666 attagaagacg 676  Q
     | ||||||||    
T  2373350 ctaagaagacg 2373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 567 - 676
Target Start/End: Original strand, 16900994 - 16901106
Alignment:
Q  567 taaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaat 663  Q
    |||||||| |||||| |||||| | |||  |||| ||||||||||||||||| || |||||||||||  |   |||||||||||| |||||| |||||||    
T  16900994 taaggctaaactgcacttttcgcctcctatgtttcaaaatgttgcgattttgaccccctattaaaaaaaatggcaattttggcccatttcatcccaaaat 16901093  T
Q  664 tgattagaagacg 676  Q
    || | ||||||||    
T  16901094 tgctgagaagacg 16901106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 25556903 - 25556984
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||| ||||||||| ||||||||||| |   ||||||||||||||||||| ||||||||| | ||||||||    
T  25556903 gtttcaaaatgttgcaattttggccccctattaaaaaattggcaattttggcccctttcatcccaaaattgctgagaagacg 25556984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 569 - 630
Target Start/End: Complemental strand, 20654099 - 20654038
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaa 630  Q
    |||||| |||||| |||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  20654099 aggctaaactgcacttttcgacccctaagtttcaaaatgttgtgattttggcctcctattaa 20654038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 31648294 - 31648179
Alignment:
Q  564 atttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaa 660  Q
    |||| |||||| |||||| |||||| | |||  |||| ||||||||||||||||||||| ||||||||||  |   |||||||| |||||||||| ||||    
T  31648294 attttaggctaaactgcacttttcgtcccctatgtttcaaaatgttgcgattttggccttctattaaaaaaaatggcaattttgacccctttcatcccaa 31648195  T
Q  661 aattgattagaagacg 676  Q
    || || | ||||||||    
T  31648194 aactgctgagaagacg 31648179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 569 - 674
Target Start/End: Original strand, 31055314 - 31055421
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag-ta-caattttggcccctttcattccaaaattga 666  Q
    |||||| |||||| |||||| | |||  |||| | |||||||| ||||||||| |||||||||||  || ||||||||||||||||||| |||||||||     
T  31055314 aggctaaactgcacttttcgccccctatgtttcataatgttgcaattttggccccctattaaaaaaatagcaattttggcccctttcatcccaaaattgc 31055413  T
Q  667 ttagaaga 674  Q
    | ||||||    
T  31055414 tcagaaga 31055421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 571 - 617
Target Start/End: Original strand, 4800935 - 4800981
Alignment:
Q  571 gctagactgcatttttcgacgccttagttttaaaatgttgcgatttt 617  Q
    |||| ||||||||||||| | ||| ||||||||||||||||||||||    
T  4800935 gctaaactgcatttttcgccccctaagttttaaaatgttgcgatttt 4800981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 18695279 - 18695198
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| ||||| |||||||||||||| |||||||||||     |||||||||||||||||||  |||||||| | ||||||||    
T  18695279 gtttcaaaatattgcgattttggccccctattaaaaaaatggcaattttggcccctttcatctcaaaattgctgagaagacg 18695198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Original strand, 8645795 - 8645860
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| ||| || |||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  8645795 aaggctaaacttcacttttcgccctcttagtttcaaaatgttgcgattttgaccccctattaaaaa 8645860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 18695030 - 18695067
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  18695030 agttttaaaatgttgcgattttgaccccctattaaaaa 18695067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 23765667 - 23765630
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  23765667 agttttaaaatgttgcaattttggccccctattaaaaa 23765630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 23815515 - 23815478
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  23815515 agttttaaaatgttgcaattttggccccctattaaaaa 23815478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 596 - 680
Target Start/End: Complemental strand, 9311 - 9224
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatt---aaaaagtacaattttggcccctttcattccaaaattgattagaagacgtcac 680  Q
    |||||||||||||||||||||||  |  |||||   ||||| ||||||||||||||||||| | ||||||||| ||||||||||||||    
T  9311 agttttaaaatgttgcgattttgatccgctattaaaaaaaattacaattttggcccctttcgtcccaaaattgcttagaagacgtcac 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 40836483 - 40836419
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||||    
T  40836483 aggctaaactgcatttttcgccccctaagttttaaaatgttgcgattttgaccccctattaaaaa 40836419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 560 - 664
Target Start/End: Original strand, 32960635 - 32960740
Alignment:
Q  560 ataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattc 657  Q
    |||||||| |||||| ||||||||||||| | |||  |||| |||||||||| ||||||||| |||||||||||     ||||||||||||||||||| |    
T  32960635 ataaattttaggctaaactgcatttttcgccccctatgtttcaaaatgttgcaattttggcc-cctattaaaaaaatggcaattttggcccctttcatcc 32960733  T
Q  658 caaaatt 664  Q
    |||||||    
T  32960734 caaaatt 32960740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 691
Target Start/End: Complemental strand, 20001986 - 20001889
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatta-aaaagta-caattttggcccctttcattccaaaattgattagaagacgtcacatcttccaaaa 691  Q
    ||||| |||||||||||||||||||| ||||||| |||| || |||||||| ||| |||||| ||||||||| | |||||||| ||| | ||||||||    
T  20001986 agtttcaaaatgttgcgattttggccccctattaaaaaaatagcaattttgccccttttcatcccaaaattgttgagaagacgccacgtgttccaaaa 20001889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 583 - 691
Target Start/End: Complemental strand, 23320651 - 23320540
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaag---tacaattttggcccctttcattccaaaattgattagaagacgtca 679  Q
    ||||||||  || |||||||||||||||||||||||  | |||||||||||    ||||||||||||||||||| | ||||||||| | | |||||| ||    
T  23320651 ttttcgaccactaagttttaaaatgttgcgattttgatcccctattaaaaaaaattacaattttggcccctttcgtcccaaaattgctgaaaagacgcca 23320552  T
Q  680 catcttccaaaa 691  Q
    ||| | ||||||    
T  23320551 catgtcccaaaa 23320540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 604 - 665
Target Start/End: Original strand, 28173763 - 28173827
Alignment:
Q  604 aatgttgcgattttggcctcctatt--aaaaagta-caattttggcccctttcattccaaaattg 665  Q
    |||||||||||||||||| ||||||  |||||||| ||||||||||||||||||| |||||||||    
T  28173763 aatgttgcgattttggccccctattaaaaaaagtagcaattttggcccctttcatcccaaaattg 28173827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 26628052 - 26628134
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||| ||||||||| |||||||||||  |   ||||||||||||||||||| ||||||||| | ||||||||    
T  26628052 gtttcaaaatgttgcaattttggccccctattaaaaaaaatggcaattttggcccctttcatcccaaaattgctgagaagacg 26628134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 33279889 - 33279825
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||| | |||||| | ||| ||||||||||||||||||||||| || |||||||||||    
T  33279889 aggctagactgaacttttcgccccctaagttttaaaatgttgcgattttgaccccctattaaaaa 33279825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 633
Target Start/End: Original strand, 36311151 - 36311214
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| |||||| |||||| | ||| |||||||||||||||||||||||||| |||||||||||    
T  36311151 aggctaaactgcacttttcgtcccctaagttttaaaatgttgcgattttggcc-cctattaaaaa 36311214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 597 - 675
Target Start/End: Complemental strand, 13081171 - 13081090
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagac 675  Q
    |||| |||||||||||||||||||| |||||||||||  |   ||||||||||||| ||||| ||||||||| | |||||||    
T  13081171 gtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggcccccttcatcccaaaattgctgagaagac 13081090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 583 - 665
Target Start/End: Original strand, 40836193 - 40836276
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctatt-aaaaagtacaattttggcccctttcattccaaaattg 665  Q
    |||||| | ||| |||||||||||||||||||||||| |  ||||| ||||| | | ||||||||||||||| |||||||||||    
T  40836193 ttttcgtcccctaagttttaaaatgttgcgattttggtcctctattaaaaaaatgcgattttggcccctttcgttccaaaattg 40836276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 583 - 633
Target Start/End: Original strand, 10743422 - 10743472
Alignment:
Q  583 ttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| | ||| |||||||||||||||||||||||||| |||||||||||    
T  10743422 ttttcgccccctaagttttaaaatgttgcgattttggccccctattaaaaa 10743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 26633350 - 26633423
Alignment:
Q  559 aataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||  ||||||| |||||| |||||| | ||| ||||||||||||||||||||||| || |||||||||||    
T  26633350 aataaatacaaggctaaactgcacttttcgcc-cctaagttttaaaatgttgcgattttgaccccctattaaaaa 26633423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 568 - 676
Target Start/End: Original strand, 3328811 - 3328922
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaatt 664  Q
    ||||||| |||||| |||||| | |||  |||| |||||||| | ||||||||| |||||||||||  |   ||||||||||||||||||| | ||||||    
T  3328811 aaggctaaactgcacttttcgccccctatgtttcaaaatgttacaattttggccccctattaaaaaaaatagcaattttggcccctttcatccaaaaatt 3328910  T
Q  665 gattagaagacg 676  Q
    | | ||||||||    
T  3328911 gctgagaagacg 3328922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 4521980 - 4522017
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4521980 agttttaaaatgttgcgattttggccccctattaaaaa 4522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 25179604 - 25179641
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25179604 agttttaaaatgttgcgattttggccccctattaaaaa 25179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 560 - 676
Target Start/End: Original strand, 28154872 - 28154991
Alignment:
Q  560 ataaatttaaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcatt 656  Q
    |||| |||| ||||| ||| || |||||| | |||  |||| |||||||||| ||||||||| |||||||||||  |   |||||||||||||||||||     
T  28154872 ataattttagggctaaactacacttttcgccccctatgtttcaaaatgttgcaattttggccccctattaaaaaaaatggcaattttggcccctttcatc 28154971  T
Q  657 ccaaaattgattagaagacg 676  Q
    | ||||||| | ||||||||    
T  28154972 caaaaattgctgagaagacg 28154991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 569 - 633
Target Start/End: Complemental strand, 26628330 - 26628266
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||| ||| ||||||||| |  || ||||| |||||||||||||||||||| |||||||||||    
T  26628330 aggctaaacttcatttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaa 26628266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 633
Target Start/End: Complemental strand, 3781154 - 3781119
Alignment:
Q  598 ttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||| |||||||||||||||||||||||    
T  3781154 ttttaaaatgttacgattttggcctcctattaaaaa 3781119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 676
Target Start/End: Original strand, 46387608 - 46387690
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||| ||||| |||||||||||||| | ||||  ||||| | |||||||||||| ||||||  |||||||||| ||||||||    
T  46387608 agtttcaaaatcttgcgattttggccccttatttaaaaaattgcaattttggcccatttcatctcaaaattgatgagaagacg 46387690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 632
Target Start/End: Complemental strand, 3821154 - 3821124
Alignment:
Q  602 aaaatgttgcgattttggcctcctattaaaa 632  Q
    |||||||||||||||||||||||||||||||    
T  3821154 aaaatgttgcgattttggcctcctattaaaa 3821124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 653
Target Start/End: Complemental strand, 4776122 - 4776037
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt--aaaaagtacaattttggcccctttc 653  Q
    ||||| |||| |||||||| |  || || ||||||||||||||||||||||| | ||||  ||||| |||||||| ||||||||||    
T  4776122 ggctaaactggatttttcgccctctaagatttaaaatgttgcgattttggccccttatttaaaaaattacaatttaggcccctttc 4776037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 3329091 - 3329054
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  3329091 agtttcaaaatgttgcgattttggccccctattaaaaa 3329054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 665
Target Start/End: Complemental strand, 10743677 - 10743613
Alignment:
Q  604 aatgttgcgattttggcctcctattaaaaag--ta-caattttggcccctttcattccaaaattg 665  Q
    ||||||||||||||| || |||||||||||   || ||||||||||||||||||| |||||||||    
T  10743677 aatgttgcgattttgaccccctattaaaaaaattagcaattttggcccctttcatcccaaaattg 10743613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 22448022 - 22447985
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  22448022 agttttaaaatgttgcaattttggccccctattaaaaa 22447985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 28174007 - 28173970
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  28174007 agtttcaaaatgttgcgattttggccccctattaaaaa 28173970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 48907569 - 48907532
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  48907569 agtttcaaaatgttgcgattttggccccctattaaaaa 48907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 568 - 676
Target Start/End: Original strand, 2046 - 2158
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta----caattttggcccctttcattccaaaat 663  Q
    ||||||| |||||| |||||| | |||  ||||||||||||||| ||||||||| |||||||||||  |    ||||||||||||||||||| | |||||    
T  2046 aaggctaaactgcacttttcgccccctatgttttaaaatgttgcaattttggccccctattaaaaaaaaatagcaattttggcccctttcatccaaaaat 2145  T
Q  664 tgattagaagacg 676  Q
    || | ||||||||    
T  2146 tgctgagaagacg 2158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 2988 - 3069
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||| |||||||||||||||||||| |||||||||||     ||||||||||||| ||||| ||||||||||| ||||||||    
T  2988 gtttcaaaatgttgcgattttggccccctattaaaaaaatggcaattttggcccccttcatcccaaaattgatgagaagacg 3069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Original strand, 24991 - 25073
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta---caattttggcccctttcattccaaaattgattagaagacg 676  Q
    |||||||||| |||||||||||| | |||||||||||  |   ||||||||||||||||||| ||||||||| | ||||||||    
T  24991 gttttaaaatattgcgattttggtcccctattaaaaaaaatggcaattttggcccctttcataccaaaattgctgagaagacg 25073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 25270 - 25205
Alignment:
Q  568 aaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||| ||| ||||||||| |  || |||| ||||||||||||||||||||| | |||||||||    
T  25270 aaggctaaacttcatttttcgtcctctaagttctaaaatgttgcgattttggccccttattaaaaa 25205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 571 - 691
Target Start/End: Complemental strand, 455331 - 455207
Alignment:
Q  571 gctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaa----aaagtacaattttggcccctttcattccaaaattga 666  Q
    |||| |||||| |||||||  ||| ||||| |||||||||||||||||||| ||||||||        |||||||| |||||||||||| |||||||||     
T  455331 gctaaactgcacttttcgaaccctaagtttcaaaatgttgcgattttggccccctattaatttttttttacaatttcggcccctttcatcccaaaattgc 455232  T
Q  667 ttagaagacgtcacatcttccaaaa 691  Q
    | |||||||| ||||| | ||||||    
T  455231 tgagaagacgccacatgtcccaaaa 455207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 682
Target Start/End: Complemental strand, 10228 - 10110
Alignment:
Q  569 aggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctatt-----aaaaagtacaattttggcccctttcattccaaaat 663  Q
    |||||| |||||| |||||||| ||| |||||||||| |||||||||||||   || |||     ||||| ||||||||||| ||||||| | |||||||    
T  10228 aggctaaactgcacttttcgacccctaagttttaaaacgttgcgattttggtacccaattaaaaaaaaaaatacaattttggtccctttcgtcccaaaat 10129  T
Q  664 tgattagaagacgtcacat 682  Q
    || | |||||||| |||||    
T  10128 tgttgagaagacgccacat 10110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 597 - 676
Target Start/End: Complemental strand, 2267 - 2186
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctatt-aaaaagta-caattttggcccctttcattccaaaattgattagaagacg 676  Q
    ||||||||||||||| |||||||||  ||||| ||||| || ||||||||||||||||||| | ||||||| | ||||||||    
T  2267 gttttaaaatgttgcaattttggccctctattaaaaaaatagcaattttggcccctttcatccaaaaattgctgagaagacg 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 2023 - 2060
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    ||||||||||||||||||||||| || |||||||||||    
T  2023 agttttaaaatgttgcgattttgaccccctattaaaaa 2060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 674
Target Start/End: Complemental strand, 6107 - 6028
Alignment:
Q  597 gttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgattagaaga 674  Q
    ||||| ||||||||||||||||||| |||||||||||     ||||||||||||| ||||| ||||||||| | ||||||    
T  6107 gtttttaaatgttgcgattttggccccctattaaaaaaatggcaattttggcccccttcatcccaaaattgctgagaaga 6028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 567 - 633
Target Start/End: Original strand, 61811 - 61877
Alignment:
Q  567 taaggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||| ||| || |||||| |  || ||||| |||||||||||||||||||| |||||||||||    
T  61811 taaggctaaacttcacttttcgccttctaagtttcaaaatgttgcgattttggccccctattaaaaa 61877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 570 - 676
Target Start/End: Complemental strand, 19585 - 19477
Alignment:
Q  570 ggctagactgcatttttcgacgccttagttttaaaatgttgcgattttggcctcctattaaaaagta--caattttggcccctttcattccaaaattgat 667  Q
    ||||| ||||||||||||| | | | ||||| ||| |||| ||||||||||| |||||||||||     |||||||||||| |||||| | ||||||| |    
T  19585 ggctaaactgcatttttcgccccttaagtttcaaactgtttcgattttggccccctattaaaaaaatggcaattttggcccatttcatccaaaaattgct 19486  T
Q  668 tagaagacg 676  Q
     ||||||||    
T  19485 gagaagacg 19477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 49685 - 49722
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||| | |||||||||||    
T  49685 agttttaaaatgttgcgattttggacccctattaaaaa 49722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 633
Target Start/End: Original strand, 62224 - 62261
Alignment:
Q  596 agttttaaaatgttgcgattttggcctcctattaaaaa 633  Q
    |||||||||||||||||||||||| | |||||||||||    
T  62224 agttttaaaatgttgcgattttggacccctattaaaaa 62261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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