View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_20 (Length: 563)
Name: NF11788_low_20
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 14 - 550
Target Start/End: Complemental strand, 36899237 - 36898698
Alignment:
| Q |
14 |
agagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaagaaa |
113 |
Q |
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| T |
36899237 |
agagttaagaacaaaaaagcagactagtagaaccaccacactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaagaaa |
36899138 |
T |
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| Q |
114 |
gggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggttag- |
212 |
Q |
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| T |
36899137 |
gggatttggatgtaagaaaatttggaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggttaga |
36899038 |
T |
|
| Q |
213 |
--gtagataccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgttttttagcacaagttgtaattgataattaaggta |
310 |
Q |
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| T |
36899037 |
tagtagataccatagacgtgggtctgcccaaaatattcaatccgtaatgattcttgagatgtatgatttttagcacaagttgtaattgataattaaggta |
36898938 |
T |
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| Q |
311 |
ctatcaatttatgataatactagtattatgatagtggttcaagttaaactccaccagttctaaattgtcgatagtacatttgactttaaatttggtttca |
410 |
Q |
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| T |
36898937 |
ctatcaatttatgataatactagtattatgatagtggttcaagttaaactccaccagttctaaattgtcgatagtacatttgactttaaatttggtttca |
36898838 |
T |
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| Q |
411 |
tggcaccagcttcgcacgtatgcctgagtgctaacccatttcctaagatggaactcaattaacagtatatgtcaacctcccatggcataatttttctttg |
510 |
Q |
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| T |
36898837 |
tggcaccagcttcgcacgtatgcctgagtgctaacccatttcctaagatggaactcaactaacagcatatgtcaacctcccatggcataatttttctttg |
36898738 |
T |
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| Q |
511 |
aaatgtcctacaagaaagtacattaatagatggtgatgtc |
550 |
Q |
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| T |
36898737 |
aaatgtcctacaagaaagtacattaatagatggtgatgtc |
36898698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 37009021 - 37009197
Alignment:
| Q |
14 |
agagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaagaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||||| |
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| T |
37009021 |
agagttaagaacaaaaaagcagactagtagaaccaatgcactgcctcttcccagagccatg-tttctctactattatttgctagaaaactgtgaaagaaa |
37009119 |
T |
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| Q |
114 |
gggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatctta |
197 |
Q |
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| T |
37009120 |
ggta-----atgtaa-tgaatttggaatgatgtggtaaggttttataattgaggagtgagtgaagaggcctgcaagaaatctta |
37009197 |
T |
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