View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_25 (Length: 542)
Name: NF11788_low_25
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 523
Target Start/End: Original strand, 53613724 - 53614232
Alignment:
| Q |
15 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatatgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
114 |
Q |
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| T |
53613724 |
atgaacttggtttaataataaagcaaaataaaaggaaaaaagggagaatttgtgatgataaaatgagtatgacctcagctgatatgtcaaagtatgatct |
53613823 |
T |
|
| Q |
115 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatatgaagagtaaaagttcatttgtgttgccagactctagaaaaggtaaatattttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53613824 |
agaacacctcgtcattgtctctttcgagtgcattttcatctgatattaagagtaaaagttcatttgtgttgccagactctagaaaaggttaatattttca |
53613923 |
T |
|
| Q |
215 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcannnnnnnnactgacagtctaacatctgctgcagcagcttctatttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53613924 |
tcaagcatttaaaaatcaaattataagcactgttttagaccttaaagttgttcattttttttactgacagtctaacatctgctgcagcagcttctatttt |
53614023 |
T |
|
| Q |
315 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatcagcatttgtaattaacg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53614024 |
ttcgacggtttcagtgattgtatgttgggatccaagccttgttgtctgcttcatgtgatcctaaacatcaaactcataacatcagcatttgtaattaaag |
53614123 |
T |
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| Q |
415 |
gatctacagataatttaaatacctttcagatttgtagacttgcctgttcttcaaaaagggtgaataaatcaaagtcctgaaacatggctatcagttgaaa |
514 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53614124 |
gatctatagataatttaaatacctttcagatttgtagacttgcctgttcttcaaaaagggtgaataaatcaaagtcctgaaacatggctatcagttgaaa |
53614223 |
T |
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| Q |
515 |
cgcgttaat |
523 |
Q |
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| T |
53614224 |
cgcgttaat |
53614232 |
T |
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