View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_27 (Length: 540)
Name: NF11788_low_27
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 5273258 - 5273779
Alignment:
| Q |
1 |
tcaagtgtcctaaacactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273258 |
tcaagtgtcctaaacactaatcaacattcaaaactctttaaa-caattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacag |
5273356 |
T |
|
| Q |
101 |
ctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273357 |
ctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacag |
5273456 |
T |
|
| Q |
201 |
tcccccttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcctcnnnnnnnnnnnnng |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5273457 |
tcccccttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcctcaaaaaagcaaaaag |
5273556 |
T |
|
| Q |
301 |
attctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnnnnnngattctagcagt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5273557 |
attctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagtta------catcatcatcatcagattctagcagt |
5273650 |
T |
|
| Q |
401 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273651 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
5273750 |
T |
|
| Q |
501 |
aattccatacactttcctcattcatctca |
529 |
Q |
| |
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||||||| ||||||||||||||||||||| |
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| T |
5273751 |
aattccacacactttcctcattcatctca |
5273779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 501
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
401 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
500 |
Q |
| |
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||||| |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| |||| |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
|
| Q |
501 |
a |
501 |
Q |
| |
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| |
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|
| T |
36151243 |
a |
36151243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 501
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
407 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
501 |
Q |
| |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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