View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_28 (Length: 536)
Name: NF11788_low_28
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 56 - 515
Target Start/End: Original strand, 8261930 - 8262389
Alignment:
| Q |
56 |
cctacccactcattatccattgattttaagcaagagcttccaagagagcaacaaaagcagatacaggatttccaaaaatagctgaaaatattagcttgaa |
155 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8261930 |
cctacccactcgttatccattgattttaagcaagagcttccaatagagcaacaaaagcagatacaggatttccaaaaatagctgaaaatattagcttgaa |
8262029 |
T |
|
| Q |
156 |
caccacaacagctatctttgtgtacttgctcatagtcgttgctctccttgaaattcttgaactttgatccatttccaagcttgtgagtgcaagttgagtt |
255 |
Q |
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|||||||||||||||||||||||||||||| |||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8262030 |
caccacaacagctatctttgtgtacttgcttatagtcctttctctacttgcaattcttgaactttgatccatttccaagcttgtgagtgcaagttgagtt |
8262129 |
T |
|
| Q |
256 |
tccctatcactcatagaagttgaatttgtaattgacctacctccttgagaaaaataannnnnnntccagttctcaagtatcaaagccttgaaacaagaca |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8262130 |
tccctatcactcatagaagttgaatttgtaattgacctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaagaca |
8262229 |
T |
|
| Q |
356 |
catgataagtagaatttccatcataataagaccacccttgaaaatttcccacaacatgcttatgcttacatttcacacactttgaacgagctttatgata |
455 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8262230 |
catgataactagaatttccatcataataagaccacccttgaaaatttcccacaacatgcttatgcttacatttcacacactttgaacgagctttatgata |
8262329 |
T |
|
| Q |
456 |
gagtgtcacgtttccactttcatctgaaatactatgtttcagcttcaaacaacatggatg |
515 |
Q |
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| T |
8262330 |
gagtgtcacgtttccactttcatctgaaatactatgtttcagcttcaaacaacatggatg |
8262389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 328 - 515
Target Start/End: Complemental strand, 8322765 - 8322578
Alignment:
| Q |
328 |
tcaagtatcaaagccttgaaacaagacacatgataagtagaatttccatcataataagaccacccttgaaaatttcccacaacatgcttatgcttacatt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8322765 |
tcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccacccttgaatatttcccacaacatgcttatgcttacatt |
8322666 |
T |
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| Q |
428 |
tcacacactttgaacgagctttatgatagagtgtcacgtttc-cactttcatctgaaatactatgtttcagcttcaaacaacatggatg |
515 |
Q |
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| T |
8322665 |
ttacacactttgaacgagatttacgatagagttgca-gtttcacgtctccatcagaaatactatcttgcagcttcaaacaacaaggatg |
8322578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 320 - 441
Target Start/End: Complemental strand, 8280195 - 8280074
Alignment:
| Q |
320 |
tccagttctcaagtatcaaagccttgaaacaagacacatgataagtagaatttccatcataataagaccacccttgaaaatttcccacaacatgcttatg |
419 |
Q |
| |
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|||| |||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |
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| T |
8280195 |
tccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttgaacttttcccataacatgcttatg |
8280096 |
T |
|
| Q |
420 |
cttacatttcacacactttgaa |
441 |
Q |
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||||||||| ||||||||||| |
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| T |
8280095 |
cttacatttaccacactttgaa |
8280074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 8280344 - 8280249
Alignment:
| Q |
111 |
agcagatacaggatttccaaaaatagctgaaaatattagcttgaacaccacaacagctatctttgtgtacttgctcatagtcgttgctctccttga |
206 |
Q |
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|||||||| ||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
8280344 |
agcagatatagggtttccaaaaatagctgaaaatagtagcttgaaaatcacaacagctatctttgtgtacttgctcatagtccttgttcttcttga |
8280249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 8322955 - 8322894
Alignment:
| Q |
114 |
agatacaggatttccaaaaatagctgaaaatattagcttgaacaccacaacagctatctttg |
175 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||| |||| || || ||||||| |
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| T |
8322955 |
agatataggatttccaaaaatagctgaaaatattagtttgaacgccactactgccatctttg |
8322894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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