View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_3 (Length: 959)

Name: NF11788_low_3
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_3
NF11788_low_3
[»] chr4 (59 HSPs)
chr4 (19-953)||(27571081-27572014)
chr4 (146-777)||(27418996-27419621)
chr4 (467-779)||(27411379-27411690)
chr4 (172-791)||(27566870-27567485)
chr4 (455-791)||(27414212-27414550)
chr4 (460-792)||(27421841-27422176)
chr4 (460-781)||(27424432-27424755)
chr4 (538-696)||(27556384-27556542)
chr4 (172-413)||(27422210-27422448)
chr4 (539-700)||(27478884-27479045)
chr4 (539-700)||(27485944-27486105)
chr4 (587-700)||(27506724-27506837)
chr4 (586-700)||(27412689-27412803)
chr4 (545-742)||(27513735-27513932)
chr4 (167-413)||(27414562-27414809)
chr4 (588-700)||(27444795-27444907)
chr4 (588-739)||(27431110-27431261)
chr4 (603-700)||(27563347-27563444)
chr4 (545-700)||(27486967-27487122)
chr4 (590-700)||(27585717-27585827)
chr4 (610-700)||(27595434-27595524)
chr4 (543-700)||(27559241-27559398)
chr4 (587-739)||(27425838-27425990)
chr4 (588-696)||(27557516-27557624)
chr4 (545-700)||(27526113-27526268)
chr4 (545-700)||(27479885-27480040)
chr4 (580-699)||(27501336-27501455)
chr4 (545-700)||(27505703-27505858)
chr4 (539-681)||(27527139-27527281)
chr4 (545-702)||(27498399-27498556)
chr4 (603-700)||(27503964-27504061)
chr4 (545-700)||(27476671-27476826)
chr4 (616-699)||(27554364-27554447)
chr4 (590-700)||(27415650-27415760)
chr4 (603-700)||(27468328-27468425)
chr4 (603-700)||(27475580-27475677)
chr4 (603-696)||(27524566-27524659)
chr4 (605-697)||(27490004-27490096)
chr4 (603-699)||(27514933-27515029)
chr4 (538-700)||(27446124-27446286)
chr4 (603-700)||(27420450-27420547)
chr4 (539-700)||(27497323-27497484)
chr4 (590-739)||(27565913-27566062)
chr4 (603-700)||(27570050-27570147)
chr4 (587-699)||(27502809-27502921)
chr4 (605-700)||(17970343-17970438)
chr4 (172-353)||(27424835-27425026)
chr4 (653-699)||(27507815-27507861)
chr4 (650-700)||(27600642-27600692)
chr4 (25-134)||(27419645-27419754)
chr4 (603-700)||(27423264-27423361)
chr4 (657-702)||(27473988-27474033)
chr4 (657-700)||(27460574-27460617)
chr4 (657-700)||(27466917-27466960)
chr4 (545-700)||(27469444-27469599)
chr4 (645-700)||(27495620-27495675)
chr4 (605-696)||(27508896-27508987)
chr4 (65-127)||(27425068-27425130)
chr4 (650-696)||(27577407-27577453)
[»] chr5 (3 HSPs)
chr5 (545-700)||(1756758-1756913)
chr5 (530-729)||(1755967-1756166)
chr5 (545-699)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (545-700)||(55084770-55084925)
chr3 (539-696)||(38032260-38032417)
chr3 (539-696)||(38035033-38035190)
chr3 (539-696)||(38038525-38038682)
chr3 (539-696)||(50913474-50913631)
chr3 (539-696)||(38027433-38027590)
chr3 (587-700)||(38043929-38044042)
chr3 (545-700)||(38024876-38025031)
chr3 (545-700)||(38031328-38031483)
chr3 (605-700)||(50910004-50910099)
chr3 (545-700)||(50911870-50912025)
chr3 (654-700)||(48840713-48840759)
chr3 (643-700)||(38028767-38028824)
chr3 (608-700)||(50904793-50904885)
chr3 (545-700)||(38036794-38036949)
chr3 (643-700)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (539-696)||(21608235-21608392)
chr8 (626-700)||(21634608-21634682)
chr8 (643-700)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (605-700)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 772; Significance: 0; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 19 - 953
Target Start/End: Original strand, 27571081 - 27572014
Alignment:
Q  19 atattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27571081 atattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactat-ccaaaatgcattaacaaacatcaggtcttt 27571179  T
Q  119 ttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571180 ttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatga 27571279  T
Q  219 cctctataagacaataccatgtgaacccttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttcagaccctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27571280 cctctataagacaataccatgtgaacccttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttgagaccctt 27571379  T
Q  319 agcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571380 agcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctc 27571479  T
Q  419 tgccatcatcagta-nnnnnnnngtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaaca 517  Q
    ||||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571480 tgccatcatcagtatttttttttgtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaaca 27571579  T
Q  518 caagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaacc 617  Q
    |||||  || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||    
T  27571580 caagagactgccaagggacttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagcc 27571679  T
Q  618 aaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcct 717  Q
    | ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27571680 agccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgcggcgaggatgaattcct 27571779  T
Q  718 aaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaaccannnnnnnnnnctg 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  27571780 aaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattactatagaaaccattttttttttctg 27571879  T
Q  818 ttgaagannnnnnnattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattattaatgacaccaa 917  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571880 ttgaaga-ttttttattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatgagaatgttaaattattaatgacaccaa 27571978  T
Q  918 atattgttgaaacagttgcagcttttttcatctctc 953  Q
    ||||||||||||||||||||||||||||||||||||    
T  27571979 atattgttgaaacagttgcagcttttttcatctctc 27572014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 146 - 777
Target Start/End: Complemental strand, 27419621 - 27418996
Alignment:
Q  146 tgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacc 245  Q
    ||||||||||||||||| || || | |||| |||||| ||||  ||| ||||||  ||||||||||||||  |  | |||| ||||||||||||||| ||    
T  27419621 tgttggccattatctcacaatgtggggtatgtgcatgctcttccattaagcttc--ctaatccttgaaaaa-atatgtataggacaataccatgtgatcc 27419525  T
Q  246 cttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttga 345  Q
    ||||| | | ||| ||| |||| |||   || |||| |||||||| || |||||||||||||   || ||||||| ||||||||||||| |||||||||     
T  27419524 cttgtccttcacttgaccctatcacagctcaccaaattacattcactgattaattggtttgtag-aggcccttagaaactatatatacattattccttgg 27419426  T
Q  346 gttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtannnnnnnngtgag 445  Q
     |||||||| ||||| ||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||        |||||    
T  27419425 attctcaaatcaacataaatcttttgcattctgaattataagaattcaaatatttctttctcatccaatcctctgccatcatcagtatcttttt-gtgag 27419327  T
Q  446 gaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcc 545  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  27419326 gagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcc 27419227  T
Q  546 caaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatca 645  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  ||||||||||||||||||||    
T  27419226 caaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatca 27419127  T
Q  646 agcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagct 745  Q
    | |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||| || | || ||||||||||| || |||  |    
T  27419126 atcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt-aagtgattt 27419028  T
Q  746 ctagatcatgctaatggagatttagatagatt 777  Q
     || |||||||||||||||||| |||||||||    
T  27419027 gtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 467 - 779
Target Start/End: Complemental strand, 27411690 - 27411379
Alignment:
Q  467 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 566  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  567 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 666  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  667 tgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagat 766  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||    
T  27411490 tgatcatcctatgggtggtctcacaattccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagat 27411392  T
Q  767 ttagatagattag 779  Q
    | |||||||||||    
T  27411391 taagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 172 - 791
Target Start/End: Original strand, 27566870 - 27567485
Alignment:
Q  172 gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca 271  Q
    |||| |||||||||||  ||||| ||||||||||| |||||||||||| || || | ||||| |||||||| |||| || ||| | ||| | |||| |||    
T  27566870 gtatgtgcatgttcttccatttatcttcatctaatgcttgaaaatgacttccatgatacaatgccatgtgatccctggtccctcagtaggccctatcaca 27566969  T
Q  272 atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacac--tattccttgagttctcaaagcaacacaaatcttt 369  Q
       ||||| || || |||||||| ||| ||||||||  ||| ||||||||||||||||||| ||  ||||| || |||||||||  || ||||| |||||    
T  27566970 gctcatcacaacactttcattggctaagtggtttgta-caggcccttagcaactatatatatacattattcttttagttctcaat-caccacaagtcttt 27567067  T
Q  370 tccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtannnnnnnngtgagga-accataaataataaaaacaat 468  Q
    | |||  | | | || | || |||||||||||||||||||||||||||||  ||| |||||||         ||  |  ||||||||     ||||||||    
T  27567068 tgcatcataaatcatcagaattcaaatatttctttctcatccaatcctctaacataatcagtattttttttttggtgctaccataaa-----aaaacaat 27567162  T
Q  469 gggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgtat 568  Q
    ||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||| |||    
T  27567163 gggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctcgcagtctat 27567262  T
Q  569 gttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatg 668  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| ||||    
T  27567263 gttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatg 27567362  T
Q  669 atcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagattt 768  Q
    ||||||| |||||||||||||||||||||||| |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| |||||||||||    
T  27567363 atcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaatggagattt 27567462  T
Q  769 agatagattagttgaagctaatt 791  Q
    ||||||| ||||||| |||||||    
T  27567463 agatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 455 - 791
Target Start/End: Complemental strand, 27414550 - 27414212
Alignment:
Q  455 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 554  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  555 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 654  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  655 agaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atc 752  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||| | || |||||||||| ||| || ||||||||| ||||||||||| |||  ||     
T  27414350 agaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatatt 27414251  T
Q  753 atgctaatggagatttagatagattagttgaagctaatt 791  Q
    ||||||| |||| |||||||||||||||||| |||||||    
T  27414250 atgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 460 - 792
Target Start/End: Complemental strand, 27422176 - 27421841
Alignment:
Q  460 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 559  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  560 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 659  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  660 tt----ggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatg 755  Q
    ||    ||||| |||||||| | |||||||||||||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || ||||||    
T  27421976 ttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatg 27421877  T
Q  756 ctaatggagatttagatagattagttgaagctaatta 792  Q
    |||||  ||| ||||||||||||||| | ||||||||    
T  27421876 ctaat-cagacttagatagattagttaaggctaatta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 460 - 781
Target Start/End: Complemental strand, 27424755 - 27424432
Alignment:
Q  460 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  560 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 659  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  660 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgct 757  Q
     ||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||    
T  27424555 atggatatgatcatccaatgggtggtcttaccattccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgct 27424456  T
Q  758 aatggagatttagatagattagtt 781  Q
    ||| |||||| | |||||||||||    
T  27424455 aatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 538 - 696
Target Start/End: Complemental strand, 27556542 - 27556384
Alignment:
Q  538 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 637  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  638 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 172 - 413
Target Start/End: Complemental strand, 27422448 - 27422210
Alignment:
Q  172 gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca 271  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||| | |||| |||    
T  27422448 gtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccctcactaggccctatcaca 27422349  T
Q  272 atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttc 371  Q
       ||||||||||| |||||||| ||||||||||| |  || |||||||||||||| ||||||||| || ||| | |||| ||| ||||||| ||||||     
T  27422348 gctcatcaaaatactttcattggctaattggtttg-tagagtcccttagcaactatttatacactactctttg-ggtctc-aagtaacacaagtcttttg 27422252  T
Q  372 cattctgagttataaaaactcaaatatttctttctcatccaa 413  Q
    |||  | | |||| | || |||||||||||||||||||||||    
T  27422251 catcataaattatcagaattcaaatatttctttctcatccaa 27422210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 539 - 700
Target Start/End: Complemental strand, 27479045 - 27478884
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 539 - 700
Target Start/End: Complemental strand, 27486105 - 27485944
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 587 - 700
Target Start/End: Original strand, 27506724 - 27506837
Alignment:
Q  587 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 686  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  687 tcacaattccttgc 700  Q
    |||| |||||||||    
T  27506824 tcaccattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 586 - 700
Target Start/End: Original strand, 27412689 - 27412803
Alignment:
Q  586 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggt 685  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| ||||||||     
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  686 ctcacaattccttgc 700  Q
    ||||| |||||||||    
T  27412789 ctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 545 - 742
Target Start/End: Complemental strand, 27513932 - 27513735
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 742  Q
    |||| |||||| ||| || |||||||||||| |||||||||||||| ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 167 - 413
Target Start/End: Complemental strand, 27414809 - 27414562
Alignment:
Q  167 gtagagtatttgcatgttcttatatttagcttcatctaatcctt-gaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactct 265  Q
    |||| |||| |||||||||||  |||||||||||||||||  || ||||||||| |||||| ||||||||||||||| ||||||| ||| ||||| | ||    
T  27414809 gtagggtatgtgcatgttcttccatttagcttcatctaatagtttgaaaatgacttctataggacaataccatgtgatcccttgtccctcactaggccct 27414710  T
Q  266 attacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatataca-ctattccttgagttctcaaagcaacacaaa 364  Q
    || |||   ||||||||| | | |||||| | |||| |||  |  || ||||| ||||||||||||||| |||||| ||| |||||| |||||||||||     
T  27414709 atcacagctcatcaaaatgcttccattggctgattgattttgtagagtcccttggcaactatatatacacctattcattgtgttctc-aagcaacacaag 27414611  T
Q  365 tcttttccattctgagttataaaaactcaaatatttctttctcatccaa 413  Q
    |||||| ||| || | |||| | || |||||||  ||||||||||||||    
T  27414610 tcttttgcatcctaaattatcataattcaaataaatctttctcatccaa 27414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 588 - 700
Target Start/End: Complemental strand, 27444907 - 27444795
Alignment:
Q  588 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 687  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  688 cacaattccttgc 700  Q
    |||||||||||||    
T  27444807 cacaattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 27431261 - 27431110
Alignment:
Q  588 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 687  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  ||||||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  688 cacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 739  Q
    ||||||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431161 cacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 27563444 - 27563347
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 545 - 700
Target Start/End: Original strand, 27486967 - 27487122
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 590 - 700
Target Start/End: Original strand, 27585717 - 27585827
Alignment:
Q  590 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 689  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  690 caattccttgc 700  Q
    | |||||||||    
T  27585817 ccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 610 - 700
Target Start/End: Original strand, 27595434 - 27595524
Alignment:
Q  610 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||||| ||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgc 27595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 543 - 700
Target Start/End: Complemental strand, 27559398 - 27559241
Alignment:
Q  543 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 642  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  643 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
     ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 587 - 739
Target Start/End: Original strand, 27425838 - 27425990
Alignment:
Q  587 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 686  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||| |    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  687 tcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 739  Q
    |||| |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425938 tcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 588 - 696
Target Start/End: Original strand, 27557516 - 27557624
Alignment:
Q  588 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 687  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| |||||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  688 cacaattcc 696  Q
    ||| |||||    
T  27557616 cactattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 27526268 - 27526113
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| || ||| |||||| |||||||||||| | |||||||||||| |||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 545 - 700
Target Start/End: Original strand, 27479885 - 27480040
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| || ||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 580 - 699
Target Start/End: Original strand, 27501336 - 27501455
Alignment:
Q  580 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 679  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  680 ggtggtctcacaattccttg 699  Q
    ||||||||||| ||||||||    
T  27501436 ggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 27505858 - 27505703
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| || ||| |||||| |||||| ||||| |||||||||||||| |||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatggg 681  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 545 - 702
Target Start/End: Original strand, 27498399 - 27498556
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcgg 702  Q
    |||| || ||| |||| | |||||||||||| |||||||||||||| |||||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 603 - 700
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Original strand, 27476671 - 27476826
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||   || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 616 - 699
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  616 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 699  Q
    ||||||||  ||||||||||| || |||||||| || ||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 590 - 700
Target Start/End: Original strand, 27415650 - 27415760
Alignment:
Q  590 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 689  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||| ||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  690 caattccttgc 700  Q
    | |||||||||    
T  27415750 ccattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 696
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 605 - 697
Target Start/End: Original strand, 27490004 - 27490096
Alignment:
Q  605 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcct 697  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 603 - 699
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 699  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 700
Target Start/End: Original strand, 27446124 - 27446286
Alignment:
Q  538 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 637  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  638 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
     |||  ||| |||||||||| |||| |||||||||||  |||| ||||||| | |||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgc 27446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 603 - 700
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 539 - 700
Target Start/End: Complemental strand, 27497484 - 27497323
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    | | |||||| || ||||| ||||||||||||||||| |  ||||| ||||| |||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgc 27497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 590 - 739
Target Start/End: Complemental strand, 27566062 - 27565913
Alignment:
Q  590 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 689  Q
    |||||||| ||  |||||||| ||||||||||||| |||||||| || || |  ||||  || |||||   ||||||||||||||| |||||||| ||||    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  690 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 739  Q
    | |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565962 ccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 27570147 - 27570050
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||| ||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 699
Target Start/End: Complemental strand, 27502921 - 27502809
Alignment:
Q  587 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 686  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtc 27502822  T
Q  687 tcacaattccttg 699  Q
    | || ||||||||    
T  27502821 ttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 605 - 700
Target Start/End: Original strand, 17970343 - 17970438
Alignment:
Q  605 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 353
Target Start/End: Complemental strand, 27425026 - 27424835
Alignment:
Q  172 gtatttgcatgttcttatatttagcttcatcta--atccttgaaaatgacctctataagac--------aataccatgtgaacccttgtacctaactaga 261  Q
    ||||||| ||||||||  ||||| |||||||||  ||||||||||||||| ||||||||||        |||||||||||| ||||||| | | |||||     
T  27425026 gtatttgaatgttcttccatttaacttcatctataatccttgaaaatgacttctataagacaatagtacaataccatgtgatcccttgtccgtcactagg 27424927  T
Q  262 ctctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaa 353  Q
    | |||| |||   || |||||||| |||||||| |||||| |||  |  ||  |||||||  |||||||||||||||||| || ||||||||    
T  27424926 ccctatcacagctcaccaaaatactttcattggctaattgattttgtagagttccttagcttctatatatacactattccatgggttctcaa 27424835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 653 - 699
Target Start/End: Complemental strand, 27507861 - 27507815
Alignment:
Q  653 gaagaatttggatatgatcatcctatgggtggtctcacaattccttg 699  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 650 - 700
Target Start/End: Original strand, 27600642 - 27600692
Alignment:
Q  650 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 27419754 - 27419645
Alignment:
Q  25 tgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcacc 124  Q
    |||| |||||||  ||||||||||| || ||||||  || |||||||| | ||||| | ||||||| |||||||  || ||||||||||| | |||||||    
T  27419754 tgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaagaaaaaacatcaggtttctttcacc 27419655  T
Q  125 aatgcattgt 134  Q
    | ||||||||    
T  27419654 attgcattgt 27419645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 700
Target Start/End: Original strand, 27423264 - 27423361
Alignment:
Q  603 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  ||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 27473988 - 27474033
Alignment:
Q  657 aatttggatatgatcatcctatgggtggtctcacaattccttgcgg 702  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 700
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  657 aatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 700
Target Start/End: Original strand, 27466917 - 27466960
Alignment:
Q  657 aatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Original strand, 27469444 - 27469599
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| ||  ||||||| ||||| ||| ||| ||| |||||| |  | |  |    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcc 27469543  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| |||||| |||||| |||||| ||||| ||||||||||| || |||||||||    
T  27469544 aagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 700
Target Start/End: Original strand, 27495620 - 27495675
Alignment:
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||| |||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgc 27495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 696
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  605 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 27425130 - 27425068
Alignment:
Q  65 atgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaat 127  Q
    |||||||||| || || | |||||||||||| || ||||||||||||||| | ||||||||||    
T  27425130 atgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaat 27425068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 650 - 696
Target Start/End: Original strand, 27577407 - 27577453
Alignment:
Q  650 gaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattcc 27577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 1756913 - 1756758
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 530 - 729
Target Start/End: Complemental strand, 1756166 - 1755967
Alignment:
Q  530 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 629  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  630 aagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttc 729  Q
    |||||||||||   |||||||||||  ||||  ||||||||||||| |  | ||||||||||||||| |||   ||||||||| || ||||  |||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatccaactgttggtctcacaattccatgcaaggaggatgaaatcttaaactttacttc 1755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 545 - 699
Target Start/End: Complemental strand, 1754397 - 1754243
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 699  Q
    || | || ||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 545 - 700
Target Start/End: Original strand, 55084770 - 55084925
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
      || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 38032260 - 38032417
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgc 38032359  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38032360 ttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttacaattcc 38032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 38035033 - 38035190
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||||||||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 38038525 - 38038682
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 38038682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 50913474 - 50913631
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 38027433 - 38027590
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || |||||||||||||| |    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgc 38027532  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||||||||| ||||||||    
T  38027533 ttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttacaattcc 38027590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 587 - 700
Target Start/End: Original strand, 38043929 - 38044042
Alignment:
Q  587 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 686  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| ||||| || |    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  687 tcacaattccttgc 700  Q
    ||||||||||||||    
T  38044029 tcacaattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 38025031 - 38024876
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 38031483 - 38031328
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 605 - 700
Target Start/End: Original strand, 50910004 - 50910099
Alignment:
Q  605 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 50910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 50912025 - 50911870
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||| |||||||||||||||||||| || |||||||| || ||||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 654 - 700
Target Start/End: Complemental strand, 48840759 - 48840713
Alignment:
Q  654 aagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 700
Target Start/End: Complemental strand, 38028824 - 38028767
Alignment:
Q  643 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 608 - 700
Target Start/End: Complemental strand, 50904885 - 50904793
Alignment:
Q  608 tacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||||||| | | ||||||||| ||  | | || |||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgc 50904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 700
Target Start/End: Complemental strand, 38036949 - 38036794
Alignment:
Q  545 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 644  Q
    ||||| |||||||| |||||||| ||||| ||   ||||| |||||||||  | ||  |  |||||||||||||| | | ||||||| | ||  | | ||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  645 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 700
Target Start/End: Complemental strand, 38040139 - 38040082
Alignment:
Q  643 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 539 - 696
Target Start/End: Original strand, 21608235 - 21608392
Alignment:
Q  539 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 638  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  639 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 696  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 21608392  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 626 - 700
Target Start/End: Original strand, 21634608 - 21634682
Alignment:
Q  626 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||  ||||| ||  ||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgc 21634682  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 700
Target Start/End: Complemental strand, 21607354 - 21607297
Alignment:
Q  643 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||  ||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgc 21607297  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 605 - 700
Target Start/End: Original strand, 3073613 - 3073708
Alignment:
Q  605 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 700  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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