View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_30 (Length: 521)
Name: NF11788_low_30
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 131543 - 131217
Alignment:
| Q |
18 |
atatctttgtctgtctggttggcagacacgcaggtgaagtgaaactcataatgcattatgctaatgccaaagtgaatcaccaggtaacctattttcatca |
117 |
Q |
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| T |
131543 |
atatctttgtctgtctggttggcagacacgcaggtgaagtgaaactcataatgcattatgctaatgccaaagtgaatcaccaggtaacctattttcatca |
131444 |
T |
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| Q |
118 |
gtatttatatttatttacatacatataaggattggaattgatgattaataagtgtgtttgtgattgtaatatattgcagaaac---caggctcctcaagc |
214 |
Q |
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| T |
131443 |
gtatttatatttatttacatacatataaggattggaattgatgattaataagtgtgtttgtgatggtaatatattgcagaaacctgcaggctcctcaagc |
131344 |
T |
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| Q |
215 |
catattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccag |
314 |
Q |
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| T |
131343 |
catattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccag |
131244 |
T |
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| Q |
315 |
caatacctgctgctgctgcttctgctt |
341 |
Q |
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| T |
131243 |
caatacctgctgctgctgcttctgctt |
131217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 409 - 517
Target Start/End: Complemental strand, 131149 - 131041
Alignment:
| Q |
409 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattc |
508 |
Q |
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| T |
131149 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctacaggttatcctccaaacgctggtaagtaattc |
131050 |
T |
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| Q |
509 |
ttctctctc |
517 |
Q |
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| T |
131049 |
ttgtctctc |
131041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 148 - 326
Target Start/End: Original strand, 161543 - 161720
Alignment:
| Q |
148 |
attggaattgatgattaataagtgtgtttgtgattgtaatatattgcagaaaccaggctcctcaagccatattccttacatggcaa---caccgccggca |
244 |
Q |
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| T |
161543 |
attggaattgatc-ttaatgagtgtgtttgggatgctaatatattgcagaaaccaggctcctcaagccatactccctatacagcaatgccaacgccggca |
161641 |
T |
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| Q |
245 |
gtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaattatcacaatccagcaatacctgctg |
326 |
Q |
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| T |
161642 |
gtcccatcatataatcacgttccttcctactaccca---caacaaccacactctaattatcaccatccaacaacacctgctg |
161720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 413 - 510
Target Start/End: Original strand, 161903 - 162000
Alignment:
| Q |
413 |
taccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattctt |
510 |
Q |
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| T |
161903 |
taccctcctccccactcttatccgccatcttcagcttatccaccaccatcataccctccacctgcaggttatcctccaaacactggtaagtaattctt |
162000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 161479 - 161512
Alignment:
| Q |
75 |
atgctaatgccaaagtgaatcaccaggtaaccta |
108 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
161479 |
atgccaatgccaaagtgaatcaccaggtaaccta |
161512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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