View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_36 (Length: 496)
Name: NF11788_low_36
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 35243700 - 35244026
Alignment:
| Q |
16 |
atagctacaacctccataactccaccgtgagtctgacccctagtatgatgatcatactttgcgattcgctagtggaactacatatttggtatctatccat |
115 |
Q |
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| T |
35243700 |
atagctacaacctccatgactccaccgtgagtctgacccctagtatgatgatcatactttgcgattcgccagtggaactacatatttggtatctatccat |
35243799 |
T |
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| Q |
116 |
tccataataagtttcatgtttaaaatttnnnnnnntcatttatgtgtggaatgattattttat--cattgtttaaattatgaatattatagatgttagac |
213 |
Q |
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| T |
35243800 |
tccataataaatttcatgtttaaaatttaaaaaa-tcatttatgtgtggaatgattattttatatcattttttaaattatgaatattatggatgttagac |
35243898 |
T |
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| Q |
214 |
ccccacaatgtgacaaattaagagtatgtttggatgacgagttttgaaggagaaatgtggagatattttatattattttttaaattatgaacactagatg |
313 |
Q |
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| T |
35243899 |
ctccacaatgtgacaaactaaaagtatgtttggatgacgagttttgaaggagaattgtggagatattttatattgttttttaaattatgaacactagatg |
35243998 |
T |
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| Q |
314 |
ttttaaaaataaattaagtgtgattgag |
341 |
Q |
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| T |
35243999 |
ttttaaaaataaattaaatgtgattgag |
35244026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 486
Target Start/End: Original strand, 35244096 - 35244171
Alignment:
| Q |
411 |
gacttagtgtaagtttggttacgtgtttcggcacctcaagcatgcgtttttgtcagtaaacgtgattcttctctct |
486 |
Q |
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| T |
35244096 |
gacttagtgtaagtttggttacgtgtttcggcacctcaagcacgcgtttttgtcagtaaacgtgattcttgtctct |
35244171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 36149908 - 36149965
Alignment:
| Q |
423 |
gtttggttacgtgtttcggcacctcaagcatgcgtttttgtcagtaaacgtgattctt |
480 |
Q |
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| T |
36149908 |
gtttggttacgcgtttcaacccctcaaacgtgcgtttttgtccgtaaacgtgattctt |
36149965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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