View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_38 (Length: 485)
Name: NF11788_low_38
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 3 - 468
Target Start/End: Original strand, 23917041 - 23917506
Alignment:
| Q |
3 |
agggaatttgagtccattggaaaaattcagttagataaatcacttcnnnnnnnnnnnngatgtgattacgaggatgaagctataagcatgcagggtttgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | || || | ||||||||||||||||||||||||||||| |
|
|
| T |
23917041 |
agggaatttgagtccattggaaaaattcagttagataaatcacttcaaaaagaaaaaaggcgcgactatgtggatgaagctataagcatgcagggtttgc |
23917140 |
T |
|
| Q |
103 |
aacatcttagccttaagaaaaaagagagaaatcttcattccggttttgaaaatcgacttccaccgttggaacgaaaagataaaggtgtgtcagttggttg |
202 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23917141 |
aacatcatagccttaagaaaaaagaaagaagtcttcattccggttttgaaaatcgacttccaccgttagaacgaaaagataaaggtgtgtcagttggttc |
23917240 |
T |
|
| Q |
203 |
cgagaagaaagtgagttccagaagcaatgaaaccaagataaagatggatcagtggaaggactcaggtactgatgttgaccaaaaacattctcatagcatt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |
|
|
| T |
23917241 |
cgagaagaaagtgagttccagaagcaatgaaaccaagttaaggatggatcagtggaaggactcaggtactgatgttgatcaaaaaaattctcatagtatt |
23917340 |
T |
|
| Q |
303 |
ccaagagacattgttttgcttcgtccacggaaatttctacagtcgaatttcgaagactattttccactttctcaatcaatagcttcatctgatgaaattt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
23917341 |
ccaagagacattgttttgcttcgtccacggaaatttctacagtcgaatttcgaagactattttccgctttctcaatcaatagcctcatctgatgaaattt |
23917440 |
T |
|
| Q |
403 |
tttcagaatcaagcctgagtggctcatcatatatttcacttcctgaggaggcatacactgaaaatg |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23917441 |
tttcagaatcaagcctgagtggctcatcatatatttcacttcctgaggaggcatacactgaaaatg |
23917506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University