View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_39 (Length: 476)
Name: NF11788_low_39
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 36964784 - 36964310
Alignment:
| Q |
18 |
ataatcagtaatctcggcaagctctgaccatttaatacgaactttcttcccaat-aatatatctaaagttgctgctttagcaggttcaacttgaacagaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964784 |
ataatcagtaatctcggcaagctctgaccatttaatacgaagtttcttcccaatcaatatatctaaagttgctgctttagcaggttcaacttgaacagaa |
36964685 |
T |
|
| Q |
117 |
tgatcctccacagacttcactgaagataaaaacccggccaatggttgatcctggacccaaaatcggtagcagcaaaacaaaagaaaaatagacctcatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36964684 |
tgatcctccacagacttcactgaagataaaaacccggccaatggttgatcctggacccaaaattggtagcagcaaaacaaaagaaaaatagacctcatca |
36964585 |
T |
|
| Q |
217 |
atacatgtttttcctttgcatttctctaatataaagaattaaagctagcctatt------------aacgtaattctctacaatataaaaaattgagacc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
36964584 |
atacatgtttttcctttgcatttctctaatataaagaattaaagctagcctattaatgccacactgaacgtaattctctacaatataaaaaattgcgacc |
36964485 |
T |
|
| Q |
305 |
ccaaggcaaaccgtgactacaac---------agtgttgatcagtggctgctgttctgagttgtcacatcattaatgcatgaatactcatatacatgatc |
395 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964484 |
ccaaggcaaaccgtgactacaacagtgttgaaagtgttgatcagtggctgctgttctgagttgtcacatcattaatgcatgaatactcatatacatgatc |
36964385 |
T |
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| Q |
396 |
a------tattcacatcatatacaagacaatgttgattaccatttaagaatcttgaaagtccatttgtatctctg |
464 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36964384 |
atattattattcacatcatatacaagacaatgttgattaccatttaagaatcttgaaagtccatttgtatctctg |
36964310 |
T |
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