View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_4 (Length: 851)

Name: NF11788_low_4
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_4
NF11788_low_4
[»] chr3 (5 HSPs)
chr3 (18-828)||(45675330-45676141)
chr3 (109-306)||(40714514-40714711)
chr3 (319-481)||(48847599-48847763)
chr3 (362-481)||(622020-622140)
chr3 (327-410)||(16118490-16118573)
[»] chr4 (2 HSPs)
chr4 (319-488)||(41921941-41922111)
chr4 (338-418)||(49378850-49378930)
[»] chr1 (7 HSPs)
chr1 (354-481)||(43292747-43292875)
chr1 (372-481)||(9607567-9607677)
chr1 (362-481)||(31133541-31133661)
chr1 (345-428)||(2990575-2990658)
chr1 (354-428)||(35998117-35998191)
chr1 (354-418)||(8876291-8876355)
chr1 (374-412)||(47852369-47852407)
[»] chr8 (3 HSPs)
chr8 (326-488)||(41146131-41146294)
chr8 (322-481)||(11246946-11247106)
chr8 (361-428)||(39396860-39396927)
[»] chr6 (2 HSPs)
chr6 (320-481)||(32312798-32312960)
chr6 (326-418)||(5642554-5642645)
[»] scaffold0095 (1 HSPs)
scaffold0095 (361-428)||(37874-37941)
[»] chr7 (1 HSPs)
chr7 (320-481)||(10201341-10201504)
[»] chr5 (1 HSPs)
chr5 (319-428)||(15150773-15150882)


Alignment Details
Target: chr3 (Bit Score: 704; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 18 - 828
Target Start/End: Complemental strand, 45676141 - 45675330
Alignment:
Q  18 aactaagacattgccaaaatctattttcaatttttgtccttctagaaataaacccaaacattcatttaacttcacgcaaactcaattatacaaaggaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45676141 aactaagacattgccaaaatctattttcaatttttgtccttctagaaataaacccaaacattcatttaacttcacgcaaactcaattctacaaaggaaaa 45676042  T
Q  118 tgttgtttatcccgagaaacagtttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcacccctgatttccgct-aagaaacttctt 216  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  45676041 tgttgtttatcccgagaaacaacttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcatccctgatttccgcttaagaaacttctt 45675942  T
Q  217 tcaattttgaccagcctatatagttttgacatttgtatctcgggacaattcgggatgaaaaacgttcgctgcatatagcagtgctcttctacaaataaaa 316  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45675941 tcaagtttgaccagcctatataattttgacatttgtatctcgggacaattcgggattaaaaacgttcgctgcatatagcagtgctcttctacaaataaaa 45675842  T
Q  317 ccaagtgtctgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaa 416  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |    
T  45675841 ccaagtgtctgtttggtattgcttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgttagcgtagaagttagtatttgaagtttctgaga 45675742  T
Q  417 attacgacaaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaagatacaccaaatctactttaaaacaatcaaacaca 516  Q
    || ||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45675741 atcacgacaaaacaaatcgaaaagtgtacaaacgtgttattgtgtgttgcaaacgggaaaccaaagatacaccaaatctactttaaaacaatcaaacaca 45675642  T
Q  517 tcaaaatcaatataacatctctaccgtcgattttgatcccttcaaagtgaacgaaacatacactcaagcagcatatggtactagccatggagtatgtaaa 616  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45675641 tcaaaatcaatataacatttctaccgtcgattttgatcccttcaaagtgaacgaaacatacactcaagcagcatatggtactagccatggagaatgtaaa 45675542  T
Q  617 attaaattaaaatactcacatttacattagatgaaatattaaagtttttacatactcctttcttcaattgagaataagagaaaacacagtacaaaatctt 716  Q
    |||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675541 attaaattaagatactcacatttacattagatgaaatattaaagtacgtacatactcctttcttcaattgagaataagagaaaacacagtacaaaatctt 45675442  T
Q  717 tgggaaggggaaatatagagataagcaccgagtgagttcactacatagtagatgattacgaaatggcccctgtgtctggtcccatggattcctctgaact 816  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45675441 tgggaaagggaaatatagagataagcaccgagtgagttcacttcatagtagatgattacgaaatggcccctgtgtctggtcacatggattcctctgaact 45675342  T
Q  817 tgtttgtccaac 828  Q
    ||||||||||||    
T  45675341 tgtttgtccaac 45675330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 109 - 306
Target Start/End: Complemental strand, 40714711 - 40714514
Alignment:
Q  109 aaaggaaaatgttgtttatcccgagaaacagtttcgtgaagcatagcgacagacaaccattggttatgataagcacgtgcacccctgatttccgctaaga 208  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| | |||||||||  ||||||||| |||||||||||    
T  40714711 aaagaaaaatgttgtttatcccgagaaacagcttcgtgaagcatagcgagaaactaccattggttgttataagcacgcacacccctgaattccgctaaga 40714612  T
Q  209 aacttctttcaattttgaccagcctatatagttttgacatttgtatctcgggacaattcgggatgaaaaacgttcgctgcatatagcagtgctcttct 306  Q
    || |  |||||||||| |||| |||||| |   | ||||  |||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||    
T  40714611 aattgttttcaattttaaccaacctataaaagatggacacctgtatctcggaataattcgggatgaaaaacattcgctgcatatagcggtgctcttct 40714514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 319 - 481
Target Start/End: Complemental strand, 48847763 - 48847599
Alignment:
Q  319 aagtgtctgtttggtattgcttttgaaaaacggaatttga-tagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaa 417  Q
    ||||||||||||||||  || |||||||||| || ||||| | |||||||| | |||||||||||||||||  |||||||||||||||||||| ||||||    
T  48847763 aagtgtctgtttggtacagcgtttgaaaaacagagtttgaatggaaatcacggcaaaaaaccacgttagcgaggaagttagtatttgaagcttgtgaaaa 48847664  T
Q  418 ttacgac-aaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaa 481  Q
    | ||| | ||||  ||||| |||| || ||||| |||| |||| |||||||||| | ||||||||    
T  48847663 tcacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaa 48847599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 362 - 481
Target Start/End: Original strand, 622020 - 622140
Alignment:
Q  362 aaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgac-aaaacacatcgaaaaatgtacaaacgtgctattgtg 460  Q
    ||||||| | |||||||||||||| |||||||| ||||||||| ||||| | ||||| ||| | ||||| ||||||| ||  | |||| ||||| ||||     
T  622020 aaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaatcacggcaaaaacgcatcgaataacatgcaaatgtgcttttgta 622119  T
Q  461 tgttgcaaacaggaaaccaaa 481  Q
    |||||||||||||||||||||    
T  622120 tgttgcaaacaggaaaccaaa 622140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 16118490 - 16118573
Alignment:
Q  327 gtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagctt 410  Q
    ||||||||| || |||| ||||  ||||||||| ||||||||   ||||||||||||||||||||||| ||||||||| |||||    
T  16118490 gtttggtatagcgtttgcaaaatagaatttgatggaaatcacgacaaaaaaccacgttagcgtagaagctagtatttggagctt 16118573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 41922111 - 41921941
Alignment:
Q  319 aagtgtctgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    |||||| ||||||  ||||| ||||||||||||| ||||||||||||||| | |||||||||||||| | |||||| ||||||||| ||||| ||| |||    
T  41922111 aagtgtttgtttgacattgcgtttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaat 41922012  T
Q  419 tacgac-aaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaagatacac 488  Q
     ||| | ||||  ||| | ||| ||| |||||||| | |||||||||||||| |||||| |||| ||||||    
T  41922011 cacggcaaaaatgcattggaaagtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaacatacac 41921941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 49378930 - 49378850
Alignment:
Q  338 cttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    |||||| |||||||| ||||||| ||||||| ||||||||||||||| ||| ||||| || |||||  |||||||||||||    
T  49378930 cttttgcaaaacggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctgaaaat 49378850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 481
Target Start/End: Original strand, 43292747 - 43292875
Alignment:
Q  354 tttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattac-gacaaaacacatcgaaaaatgtacaaacgtg 452  Q
    |||||| |||||||| ||||||||||| |||| |||| ||||||||||||| ||||||||||||| || |  |||||| | |  ||||  | ||||||||    
T  43292747 tttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatcacggtaaaaacatacccgaaaacatgcaaacgtg 43292846  T
Q  453 ctattgtgtgttgcaaacaggaaaccaaa 481  Q
    || ||||||| ||||||||||||||||||    
T  43292847 cttttgtgtggtgcaaacaggaaaccaaa 43292875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 481
Target Start/End: Complemental strand, 9607677 - 9607567
Alignment:
Q  372 aaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgac-aaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaac 470  Q
    ||||||||||||||||  ||||||||||||||  ||||||| ||||||||| | ||||||| | || |||  | |||||||||| |||||||| ||||||    
T  9607677 aaaaaaccacgttagcaaagaagttagtatttagagcttctaaaaattacggcaaaaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaac 9607578  T
Q  471 aggaaaccaaa 481  Q
     ||||||||||    
T  9607577 gggaaaccaaa 9607567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 362 - 481
Target Start/End: Original strand, 31133541 - 31133661
Alignment:
Q  362 aaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgac-aaaacacatcgaaaaatgtacaaacgtgctattgtg 460  Q
    ||||||| |||||||| ||||||||||||||| |||||| ||||| ||||| ||||| ||| | |||| | |||||||||| ||||||| || | || |     
T  31133541 aaatcacggtaaaaaaacacgttagcgtagaaattagtacttgaaacttctaaaaataacggcaaaaataaatcgaaaaatatacaaacatgttttttta 31133640  T
Q  461 tgttgcaaacaggaaaccaaa 481  Q
    | |||||||||||||| ||||    
T  31133641 tattgcaaacaggaaatcaaa 31133661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 2990575 - 2990658
Alignment:
Q  345 aaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgacaaaa 428  Q
    |||||||  ||||||  |||||||  ||||||||||| ||| |  ||||||||||||||| ||||||||||||| |||||||||    
T  2990575 aaaacggtgtttgatgaaaatcacgataaaaaaccacattaacaaagaagttagtatttgtagcttctgaaaatcacgacaaaa 2990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 35998117 - 35998191
Alignment:
Q  354 tttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgacaaaa 428  Q
    |||||| ||||||||   ||||||  ||||||||| ||||||||||||||| ||||||| ||||| |||||||||    
T  35998117 tttgatggaaatcacgacaaaaaattacgttagcgaagaagttagtatttggagcttctaaaaatcacgacaaaa 35998191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 8876355 - 8876291
Alignment:
Q  354 tttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    |||||| || |||||  |||| ||||||||||||||| |||||||||||| ||| ||||||||||    
T  8876355 tttgatggatatcacgataaacaaccacgttagcgtaaaagttagtatttaaagtttctgaaaat 8876291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 47852407 - 47852369
Alignment:
Q  374 aaaaccacgttagcgtagaagttagtatttgaagcttct 412  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  47852407 aaaaccacgttagtttagaagttagtatttgaagcttct 47852369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 488
Target Start/End: Original strand, 41146131 - 41146294
Alignment:
Q  326 tgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgac- 424  Q
    ||||||| ||||  |||| |||||||| ||||||||||||||| | |||||||||||||| |||||||  ||||||||| ||||| ||| ||| ||| |     
T  41146131 tgtttggcattgtgtttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggca 41146230  T
Q  425 aaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaagatacac 488  Q
    ||||   |||| |||  || |||   |||| ||||||||||||||| |||||||||| ||||||    
T  41146231 aaaatgtatcggaaagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaacatacac 41146294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 322 - 481
Target Start/End: Complemental strand, 11247106 - 11246946
Alignment:
Q  322 tgtctgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattac 421  Q
    ||||||||||||  | | |||| |||||| | |||||| || ||||| | ||||||| || |||||| ||||| || |||||||||||||||||||| ||    
T  11247106 tgtctgtttggtgctacgtttgcaaaacgaagtttgatggagatcacggcaaaaaactactttagcgcagaagctaatatttgaagcttctgaaaatcac 11247007  T
Q  422 gacaaaa-cacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaa 481  Q
    || |||| ||||| |  ||  || |||| ||| | ||||||||||||||||| ||||||||    
T  11247006 gataaaaacacattgggaatcgtgcaaaagtgtttttgtgtgttgcaaacagaaaaccaaa 11246946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 428
Target Start/End: Complemental strand, 39396927 - 39396860
Alignment:
Q  361 gaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgacaaaa 428  Q
    |||||||| | ||||||||||||||||  ||||| ||||||||| ||||||||||||| ||| |||||    
T  39396927 gaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaa 39396860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 320 - 481
Target Start/End: Original strand, 32312798 - 32312960
Alignment:
Q  320 agtgtctgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaatt 419  Q
    ||||||| |||||||  || |||| |||||||| |||||| |||||||| | ||||||||| ||||||||||||| |||||| || ||||| || ||||     
T  32312798 agtgtctatttggtacggcgtttgcaaaacggactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctggagcttttggaaatc 32312897  T
Q  420 acgac-aaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaa 481  Q
    ||| | ||||||||| | |||   | ||||| |||| |||| |||||| ||| ||||||||||    
T  32312898 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaa 32312960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 326 - 418
Target Start/End: Original strand, 5642554 - 5642645
Alignment:
Q  326 tgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    ||||||||||||  |||| |||||||| ||| ||  ||||||| |  ||||| |||| ||||||||||||||||||||||| |||||| ||||    
T  5642554 tgtttggtattgggtttgtaaaacggagtttaatgaaaatcac-gacaaaaatcacgctagcgtagaagttagtatttgaaacttctggaaat 5642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 37874 - 37941
Alignment:
Q  361 gaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaattacgacaaaa 428  Q
    |||||||| | ||||||||||||||||  ||||| ||||||||| ||||||||||||| ||| |||||    
T  37874 gaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaa 37941  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 481
Target Start/End: Original strand, 10201341 - 10201504
Alignment:
Q  320 agtgtctgtttggtattgcttttgaaaaacggaattt-gatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    ||||| ||||||||||||| |||| |||| ||| ||| | | ||||||||   |||||| |||||||||||||||| ||||||||| ||||| || ||||    
T  10201341 agtgtttgtttggtattgcatttgcaaaatggacttttggtggaaatcacaacaaaaaatcacgttagcgtagaagctagtatttggagcttttggaaat 10201440  T
Q  419 tac-gacaaaacacatcgaaaaatgtacaaacgtgctattgtgtgttgcaaacaggaaaccaaa 481  Q
     || |  |||| |||||  |||  || |||||||| | ||||||||||||||| | ||||||||    
T  10201441 cacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaa 10201504  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 15150773 - 15150882
Alignment:
Q  319 aagtgtctgtttggtattgcttttgaaaaacggaatttgatagaaatcaccgtaaaaaaccacgttagcgtagaagttagtatttgaagcttctgaaaat 418  Q
    |||||||| |||||||  || |||||||||  |  ||||||  |||||||   ||| |||||||||||| |||||||||||||||||| ||| |  ||||    
T  15150773 aagtgtctatttggtagagcgtttgaaaaatagggtttgatgaaaatcacgacaaacaaccacgttagcatagaagttagtatttgaaacttttagaaat 15150872  T
Q  419 tacgacaaaa 428  Q
    |||| |||||    
T  15150873 tacggcaaaa 15150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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