View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_41 (Length: 466)

Name: NF11788_low_41
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_41
NF11788_low_41
[»] chr8 (4 HSPs)
chr8 (1-450)||(1423933-1424380)
chr8 (171-282)||(10711976-10712088)
chr8 (222-282)||(44420639-44420699)
chr8 (222-271)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (209-282)||(50056893-50056966)
chr3 (194-282)||(28095952-28096039)
chr3 (170-216)||(50057279-50057325)
chr3 (137-216)||(50057409-50057488)
chr3 (235-282)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (173-258)||(39364335-39364420)
chr7 (222-282)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (137-284)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (174-277)||(25476329-25476432)
chr2 (209-282)||(17508848-17508921)
chr2 (222-282)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (222-282)||(11393149-11393209)
chr4 (222-282)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (235-282)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (223-282)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (235-282)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 1424380 - 1423933
Alignment:
Q  1 ggcgtactacggaaagtgcactcggaatgaacagtacttgcgataaacagtttgcatggtgaatagtgttttctaatgaacagggcttttaggatctcaa 100  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1424380 ggcgcactatggaaagtgcactcgaaatgaacagtacttgcgataaacagtgtgcatggtgaatagtgttttctaatgaacagggcttttaggatctcaa 1424281  T
Q  101 agagtccgcgatgaaggcaaaaactcacaataaagacgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaa 200  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  | || ||||||||||||||||||||||||||||||||| |||||    
T  1424280 agagtccgcgatgaacgcataaactcacaataaagacgaaaaaagcaaaagtaaccg-aaagactgcaactagggtttatgcggaaacaagacctcccaa 1424182  T
Q  201 gatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatatatatagggatccagctccc 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||| |    
T  1424181 gatcgggagctctgatgccacgtgaaaactaaacattatatttcagagacaaaaaatgtacaactactaatgtgtt--tatatatagggatccagctctc 1424084  T
Q  301 caagaaatattcattttgctactagcagggggaaaatattcatacggagat-aaaaaatagctataatcattttgctactggcaggggagtatgttattc 399  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  1424083 caagaaatattcattttgctactagcaggggaaaaatattcatacggagataaaaaaatagctataatcattttgctactagcaggggagtatgttattc 1423984  T
Q  400 ttgtcataggattgaactgaaatcggcaaagctttataagagtatttattg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1423983 ttgtcataggattgaactgaaatcggcaaagctttataagagtacttattg 1423933  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 10712088 - 10711976
Alignment:
Q  171 tagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactacta 269  Q
    ||||||||||||||||||||||| |||||||||   ||| |||||||||| ||||||||| || ||||||| |||||||||||| |||| | | | ||||    
T  10712088 tagggtttatgcggaaacaagactccccaagattgagagttctgatgccatgtgaaaactgaatattatatgtcagagataaaataatgtatatccacta 10711989  T
Q  270 atgtgtttatata 282  Q
    |||| ||||||||    
T  10711988 atgtatttatata 10711976  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 44420699 - 44420639
Alignment:
Q  222 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||| || |||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  44420699 gtgaaaactgaatattatatttcagagataaatgatatacaaccactaatgtgtttatata 44420639  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 16985659 - 16985708
Alignment:
Q  222 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaat 271  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||||||    
T  16985659 gtgaaaactgaatattatatttcagagataaataatgtacaaccactaat 16985708  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 50056966 - 50056893
Alignment:
Q  209 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    |||||||| ||| ||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  50056966 gctctgataccatgtgaaaactgaatattatatttcagagataaataatgtacaaccactaatgtgtttatata 50056893  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 28095952 - 28096039
Alignment:
Q  194 cccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaa-aatgcacaactactaatgtgtttatata 282  Q
    ||||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  28095952 cccccaagatcgggagctc--atgccatgtgaaaacaaaatattatatttcagagataaaataatttacaaccactaatgtgtttatata 28096039  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 50057325 - 50057279
Alignment:
Q  170 ctagggtttatgcggaaacaagaccccccaagatcaggagctctgat 216  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  50057325 ctagggtttatgcggaagcaacaccccccaagatcgggagctctgat 50057279  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 50057488 - 50057409
Alignment:
Q  137 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgat 216  Q
    ||||||||| ||||||||  |||| ||| ||  |||||||||||| |||| |||  |||||||||||| |||||||||||    
T  50057488 cgaaaaaagaaaaagtaaccgcaaagacggcggctagggtttatgtggaagcaacgccccccaagatcgggagctctgat 50057409  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 50061429 - 50061382
Alignment:
Q  235 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  50061429 attatatttcagagataaataatgtagaacgactaatgtgtttatata 50061382  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 39364335 - 39364420
Alignment:
Q  173 gggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatg 258  Q
    |||||||||||||| |||| |||| |||||||||||||||||||  || ||||||||| ||  |||||||||| ||||||| ||||    
T  39364335 gggtttatgcggaagcaaggcccctcaagatcaggagctctgatatcatgtgaaaactgaatgttatatttcaaagataaataatg 39364420  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 29443616 - 29443676
Alignment:
Q  222 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||| || |||||||||||  |||||| |||  ||||| |||||||||||||||||    
T  29443616 gtgaaaactgaatattatatttcactgataaataatatacaaccactaatgtgtttatata 29443676  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 1678916 - 1679066
Alignment:
Q  137 cgaaaaaagcaaaagtaattgcaaggactgcaactagggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacat 236  Q
    ||||||||||||||||||  |||| | | ||  ||| |||||||| |||| |||| ||||| |||||||  ||||  ||||||| ||||||||  |  ||    
T  1678916 cgaaaaaagcaaaagtaaacgcaaaggcggcggctaaggtttatgtggaagcaaggccccctaagatcaaaagcttcgatgccatgtgaaaacatactat 1679015  T
Q  237 tatatttcagagat---aaaaaatgcacaactactaatgtgtttatatata 284  Q
    ||||||||||||||   |||||||| ||||| |||||| ||||||||||||    
T  1679016 tatatttcagagataaaaaaaaatgtacaaccactaatatgtttatatata 1679066  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 25476329 - 25476432
Alignment:
Q  174 ggtttatgcggaaacaagaccccccaagatcaggagctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgt 273  Q
    ||||||||||||| |||| ||||    ||||  |||||||||||||| ||||||||| || ||||||||||| ||||||| |||  ||||| ||||||||    
T  25476329 ggtttatgcggaagcaaggcccctagtgatcgagagctctgatgccatgtgaaaactgaagattatatttcaaagataaataatttacaaccactaatgt 25476428  T
Q  274 gttt 277  Q
    ||||    
T  25476429 gttt 25476432  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 17508921 - 17508848
Alignment:
Q  209 gctctgatgccacgtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    |||||||| ||| ||||||| | || ||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  17508921 gctctgataccatgtgaaaattgaatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 38500282 - 38500219
Alignment:
Q  222 gtgaaaactaaacattatatttcaga---gataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||| || |||||||||||||   |||||| |||| ||||| |||||||||||||||||    
T  38500282 gtgaaaactgaatattatatttcagacgagataaataatgtacaaccactaatgtgtttatata 38500219  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 11393209 - 11393149
Alignment:
Q  222 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11393209 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11393149  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 11402936 - 11402876
Alignment:
Q  222 gtgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||| || ||||||||||||||||||| |||| ||||| ||| |||||||||||||    
T  11402936 gtgaaaacttaatattatatttcagagataaataatgtacaaccactgatgtgtttatata 11402876  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 12452 - 12499
Alignment:
Q  235 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  12452 attatatttcagagataaataatgtacaaccactaatgtgtttatata 12499  T

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Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 18995 - 18936
Alignment:
Q  223 tgaaaactaaacattatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||| | |||||||||||||||    
T  18995 tgaaaactaaatattatattttagagataaataatgtacaaccattaatgtgtttatata 18936  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 1286185 - 1286232
Alignment:
Q  235 attatatttcagagataaaaaatgcacaactactaatgtgtttatata 282  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1286185 attatatttcagagataaataatgtacaaccactaatgtgtttatata 1286232  T

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