View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_42 (Length: 465)
Name: NF11788_low_42
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 31082465 - 31082018
Alignment:
| Q |
1 |
cacagaccatgcttggaaagctttggagctgatcaattcgatgaagatcacactgaagaaaggaagaagaaaatgtctttcttcaactggtggaactttg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31082465 |
cacaaaccatgcttggaaagctttggagctgatcaattcgatgaagatcacaccgaagaaaggaagaagaaaatgtctttcttcaactggtggaactttg |
31082366 |
T |
|
| Q |
101 |
cactgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagctggggagctgctagtcttattctcacaattcttatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31082365 |
cactgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagctggggagctgctagtcttattctcacaattcttatggc |
31082266 |
T |
|
| Q |
201 |
tttatgtatcatagctttttatgtggggaagcctttttataggtatagaaggccacaaggaaatactttaaaaccaattttacaggtactagttgcagct |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31082265 |
tttatgtatcatagcattttatgtggggaagcctttttataggtatagaaggccacaaggaaatactttaaaaccaattttacaggtactagttgcagct |
31082166 |
T |
|
| Q |
301 |
ataaggaagagaaaattatcatgtccttcaaatccttctttattgtatgaagttccaaagtcagataagtcccaaggaaggcttctatgcaatactagca |
400 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31082165 |
ataaggaagagaaaattatcttgtccctcaaatccttctttattgtatgaagttccaaagtcagataagtcccaaggaaggcttctatgcactactagca |
31082066 |
T |
|
| Q |
401 |
agctaaggtatgatacatacagcttatcatttcaaatcaatacttttt |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31082065 |
agctaaggtatgatacatacaacttatcatttcaaatcaatacttttt |
31082018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 31065417 - 31064980
Alignment:
| Q |
1 |
cacagaccatgcttggaaagctttggagctgatcaattcgatgaagatcacactgaagaaaggaagaagaaaatgtctttcttcaactggtggaactttg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31065417 |
cacaaaccatgcttggaaagctttggagctgatcaatttgatgaagatcacgtcgaagaaaggaagaagaaaatgtctttcttcaactggtggaactttg |
31065318 |
T |
|
| Q |
101 |
cactgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagctggggagctgctagtcttattctcacaattcttatggc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||| |||||||||||||||||||| |
|
|
| T |
31065317 |
cattgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagttggggagtttcttgtctaattctcacaattcttatggc |
31065218 |
T |
|
| Q |
201 |
tttatgtatcatagctttttatgtggggaagcctttttataggtatagaaggccacaaggaaatactttaaaaccaattttacaggtactagttgcagct |
300 |
Q |
| |
|
| |||| ||||||||||| ||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31065217 |
tctatgcatcatagctttctatctagggaaacctttttataggtatagaaggccagaaggaaatactttaaaaccaattatacaggtactagttgcagct |
31065118 |
T |
|
| Q |
301 |
ataaggaagagaaaattatcatgtccttcaaatccttctttattgtatgaagttccaaagtcagataagtcccaaggaaggcttctatgcaatactagca |
400 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31065117 |
ataaggaaaagaaaattatcctgtccttcaaatcctgatttgttctatgaaattccaaagtcagataagtctcaaggaaggcttctatgcaatactagca |
31065018 |
T |
|
| Q |
401 |
agctaaggtatgatacatacagcttatcatttcaaatcaat |
441 |
Q |
| |
|
| ||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
31065017 |
acctaaggtatgaaacata---cttgtcatttcaaatcaat |
31064980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 31058573 - 31058175
Alignment:
| Q |
2 |
acagaccatgcttggaaagctttggagctgatcaattcgatgaagatcacactg-aagaaaggaagaagaaaatgtctttcttcaactggtggaactttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||| | ||| ||| |||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31058573 |
acagaccatgcttacaaagctttggagcggatcaatttgatgatggtca-tctgaaagaaatgaagaagaagctgtctttcttcaactggtggaactttg |
31058475 |
T |
|
| Q |
101 |
cactgtgttttgcattgcttcttggtgcaacagtgattgtttatgtccaagacaatgttagctggggagctgctagtcttattctcacaattcttatggc |
200 |
Q |
| |
|
| |||| |||||| |||| || || | ||||||||||| ||||| |||||| ||| | |||||||| ||||| ||| || || ||| | ||||||| |
|
|
| T |
31058474 |
gattgtgctttgcagtgctgattagttccacagtgattgtatatgttcaagactttgtcaactggggagttgctactctaatacttacagcttttatggc |
31058375 |
T |
|
| Q |
201 |
tttatgtatcatagctttttatgtggggaagcctttttataggtatagaaggccacaaggaaatactttaaaaccaattttacaggtactagttgcagct |
300 |
Q |
| |
|
| | | ||||| |||| | ||| || ||||| || ||||| || | | ||| ||||||| || || |||||||||||||| || |||||||| |
|
|
| T |
31058374 |
tattgctgtcataactttctgtgtaggtaagcccttgtatagataccggaagccggaaggaaaccctctactgccaattttacaggtccttgttgcagcc |
31058275 |
T |
|
| Q |
301 |
ataaggaagagaaaattatcatgtccttcaaatccttctttattgtatgaagttccaaagtcagataagtcccaaggaaggcttctatgcaatactagca |
400 |
Q |
| |
|
||||| || || | |||| ||||||||||||||| ||||||||||||| ||| || ||||| | || ||||||||||||||| || ||||||||| |
|
|
| T |
31058274 |
ataagaaaaagggatttatgttgtccttcaaatcctgctttattgtatgagcttcaaatttcagaccattctcaaggaaggcttctaagccatactagca |
31058175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 23694078 - 23693995
Alignment:
| Q |
12 |
cttggaaagctttggagctgatcaattcgatgaagatcacactgaagaaaggaagaagaaaatgtctttcttcaactggtggaa |
95 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| | |||||||| || ||||| |||||||| |
|
|
| T |
23694078 |
cttggaaagctttggagctgaccaatttgatgaggatcatgttgaagaaaggaaacaaaaaatgtcctttttcaattggtggaa |
23693995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University