View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_44 (Length: 450)

Name: NF11788_low_44
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_44
NF11788_low_44
[»] chr1 (21 HSPs)
chr1 (298-389)||(40172518-40172609)
chr1 (329-392)||(36472647-36472710)
chr1 (304-389)||(44751953-44752038)
chr1 (296-373)||(40009041-40009120)
chr1 (329-395)||(18635713-18635779)
chr1 (302-396)||(10799194-10799288)
chr1 (297-390)||(45443448-45443536)
chr1 (332-396)||(32336736-32336800)
chr1 (341-396)||(38487782-38487837)
chr1 (338-396)||(16934338-16934396)
chr1 (331-396)||(43183741-43183807)
chr1 (330-396)||(52678863-52678929)
chr1 (339-396)||(11098944-11099001)
chr1 (332-392)||(6871196-6871256)
chr1 (58-101)||(31141971-31142014)
chr1 (361-396)||(49294533-49294568)
chr1 (292-385)||(43225512-43225606)
chr1 (372-402)||(50838794-50838824)
chr1 (285-373)||(5267937-5268027)
chr1 (346-394)||(27845415-27845463)
chr1 (346-394)||(28308444-28308492)
[»] chr8 (14 HSPs)
chr8 (305-394)||(14239243-14239333)
chr8 (331-381)||(12020069-12020119)
chr8 (345-392)||(5431627-5431674)
chr8 (302-395)||(36665254-36665347)
chr8 (338-391)||(12136496-12136549)
chr8 (333-394)||(26055447-26055508)
chr8 (300-382)||(36548361-36548445)
chr8 (58-101)||(21634829-21634872)
chr8 (329-396)||(34453773-34453840)
chr8 (364-398)||(5589560-5589594)
chr8 (354-396)||(10995345-10995387)
chr8 (330-389)||(24289172-24289235)
chr8 (352-394)||(36772822-36772864)
chr8 (348-397)||(20472381-20472430)
[»] chr4 (20 HSPs)
chr4 (302-393)||(2097082-2097173)
chr4 (329-396)||(8456800-8456867)
chr4 (304-397)||(25391011-25391104)
chr4 (339-391)||(5251890-5251942)
chr4 (329-396)||(30979818-30979885)
chr4 (302-388)||(38020376-38020462)
chr4 (302-390)||(38272947-38273033)
chr4 (348-396)||(29728814-29728862)
chr4 (296-366)||(6478420-6478490)
chr4 (329-395)||(38450695-38450761)
chr4 (301-386)||(41594022-41594107)
chr4 (329-395)||(42687614-42687680)
chr4 (331-386)||(20228273-20228328)
chr4 (329-400)||(50289729-50289800)
chr4 (343-393)||(51285191-51285241)
chr4 (331-386)||(8600182-8600237)
chr4 (329-395)||(9524640-9524703)
chr4 (301-341)||(20016962-20017002)
chr4 (344-392)||(34257364-34257412)
chr4 (330-394)||(34702922-34702986)
[»] chr5 (12 HSPs)
chr5 (327-392)||(10635342-10635407)
chr5 (331-396)||(6296848-6296913)
chr5 (332-393)||(29814963-29815024)
chr5 (302-397)||(10707766-10707860)
chr5 (333-387)||(9860776-9860831)
chr5 (330-388)||(35097227-35097284)
chr5 (356-396)||(37157001-37157041)
chr5 (343-382)||(15024829-15024868)
chr5 (296-398)||(39735415-39735517)
chr5 (358-395)||(16609721-16609758)
chr5 (304-394)||(7367584-7367675)
chr5 (338-389)||(31674256-31674308)
[»] chr7 (23 HSPs)
chr7 (332-396)||(33084955-33085019)
chr7 (296-396)||(33872805-33872905)
chr7 (361-398)||(41437123-41437160)
chr7 (316-396)||(32002119-32002199)
chr7 (348-395)||(40778242-40778289)
chr7 (362-396)||(46976974-46977008)
chr7 (343-396)||(36025584-36025637)
chr7 (344-396)||(12272484-12272536)
chr7 (338-394)||(22812819-22812875)
chr7 (58-101)||(32089288-32089331)
chr7 (58-101)||(32096761-32096804)
chr7 (351-395)||(34779163-34779209)
chr7 (344-394)||(36062553-36062604)
chr7 (58-101)||(39128515-39128558)
chr7 (58-101)||(39478487-39478530)
chr7 (58-101)||(41706652-41706695)
chr7 (58-101)||(41812191-41812234)
chr7 (335-394)||(42713578-42713637)
chr7 (298-364)||(43735761-43735827)
chr7 (340-394)||(22878432-22878486)
chr7 (302-382)||(37829930-37830011)
chr7 (331-400)||(44184249-44184318)
chr7 (364-396)||(38375012-38375044)
[»] chr2 (10 HSPs)
chr2 (329-396)||(26009785-26009852)
chr2 (331-396)||(10429882-10429947)
chr2 (332-396)||(32103573-32103637)
chr2 (329-396)||(1652530-1652597)
chr2 (344-389)||(14195202-14195247)
chr2 (352-396)||(26849265-26849310)
chr2 (329-392)||(8734464-8734527)
chr2 (361-396)||(36959382-36959417)
chr2 (362-394)||(16452245-16452277)
chr2 (346-394)||(15646806-15646854)
[»] chr3 (18 HSPs)
chr3 (329-396)||(28590389-28590456)
chr3 (296-382)||(51569819-51569905)
chr3 (331-396)||(8790020-8790085)
chr3 (345-393)||(42529433-42529481)
chr3 (330-378)||(50574794-50574842)
chr3 (331-399)||(54135692-54135760)
chr3 (296-389)||(24446866-24446954)
chr3 (296-389)||(24465047-24465135)
chr3 (333-395)||(28409459-28409521)
chr3 (331-396)||(37897584-37897649)
chr3 (58-101)||(38044544-38044587)
chr3 (58-101)||(48838017-48838060)
chr3 (58-101)||(50152384-50152427)
chr3 (364-398)||(22729958-22729992)
chr3 (345-386)||(21498455-21498496)
chr3 (344-396)||(54913721-54913774)
chr3 (364-396)||(223064-223096)
chr3 (282-318)||(34073314-34073350)
[»] chr6 (5 HSPs)
chr6 (331-388)||(31957881-31957938)
chr6 (345-397)||(6958975-6959027)
chr6 (345-389)||(21537469-21537513)
chr6 (58-101)||(26217257-26217300)
chr6 (345-390)||(29169533-29169578)
[»] scaffold0451 (1 HSPs)
scaffold0451 (349-395)||(7640-7686)
[»] scaffold0856 (1 HSPs)
scaffold0856 (58-92)||(4912-4946)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 40172609 - 40172518
Alignment:
Q  298 tagtttgttagattaatattttactccttgcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||| |||| ||||||||    
T  40172609 tagtttgttagattaatattttactccttgccctggtttgaacccaggacctccaactccttttcccccagctcaaactagtttagctaccc 40172518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 36472647 - 36472710
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  36472647 ccgggtttgaacccaggacctccaactccttatcccttagctcagaccagttgagctacccaac 36472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 389
Target Start/End: Original strand, 44751953 - 44752038
Alignment:
Q  304 gttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    ||||||||||||||| |||| || | |||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  44751953 gttagattaatattt-actcatttgtccgggtttgaacccagaacctccaaccccttatcccttagctcaaaccagttgagctaccc 44752038  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 40009041 - 40009120
Alignment:
Q  296 gttagtttgttagattaatatttt-actcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaa 373  Q
    |||||||||||||||||||||||| |||| || || | ||||| ||| ||||||||||||||||||||||||||||||||    
T  40009041 gttagtttgttagattaatatttttactcattcgctcaggtttgaacgcaggacctccaactccttttcccttagctcaa 40009120  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 18635713 - 18635779
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||| ||| ||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||    
T  18635713 ccggatttgaacccaggacctcaaactccttatcccttagctcagaccagttgaactacccaacccc 18635779  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 10799288 - 10799194
Alignment:
Q  302 ttgttagattaatattttactccttgc-ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||||||| |||||||   || ||||| ||||||||| || ||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  10799288 ttgttagattaatattt-actccttcatcctggtttgaacccaggaacttcaactacttatcccttagctcaaactagttgagctacccaatcccc 10799194  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 45443448 - 45443536
Alignment:
Q  297 ttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccca 390  Q
    ||||||||||||||||||| |||||||||| | |||||||| ||||    ||||||||||| ||||||||| |||||||||||||| ||||||||    
T  45443448 ttagtttgttagattaata-tttactccttcgtccgggtttgaacc----acctccaactctttttccctt-gctcaaaccagttgtgctaccca 45443536  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 32336736 - 32336800
Alignment:
Q  332 ggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||| |||||| ||||| ||||||||| ||||||| || |||| ||||||||||||||||||||    
T  32336736 ggtttgaacccaagaccttcaactccttatcccttaacttaaacgagttgagctacccaaccccc 32336800  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 38487782 - 38487837
Alignment:
Q  341 ccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||||||| ||||||  |||||| |||||| |||||||||||||||||||||    
T  38487782 ccaggacctccatctccttaacccttaactcaaatcagttgagctacccaaccccc 38487837  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 16934338 - 16934396
Alignment:
Q  338 aacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||| ||||||||||| ||||||||| |||||||| | ||||| ||||||||||||    
T  16934338 aacccagaacctccaactcattttcccttggctcaaacaacttgagttacccaaccccc 16934396  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 43183741 - 43183807
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttccctt-agctcaaaccagttgagctacccaaccccc 396  Q
    |||||| |||||| |||||| |||||| ||  |||| ||||||||||||||||||||||||||||||    
T  43183741 gggttttaacccacgacctcgaactccattaacctttagctcaaaccagttgagctacccaaccccc 43183807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 52678863 - 52678929
Alignment:
Q  330 cgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||| |||||||||| ||||||||||| |||||  ||||||||||| ||||| || ||||||||    
T  52678863 cgggttttaacccaggacttccaactccttatccctaggctcaaaccagctgagcgactcaaccccc 52678929  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 11099001 - 11098944
Alignment:
Q  339 acccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||| |||| |||||||||||  ||||||||||||||| | |||||||||||||||||    
T  11099001 accctggacttccaactccttaacccttagctcaaacctgctgagctacccaaccccc 11098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 6871256 - 6871196
Alignment:
Q  332 ggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    ||||| |||||||||| ||||| ||||| ||||||| ||||||||| || |||||||||||    
T  6871256 ggtttgaacccaggacatccaagtccttatcccttaactcaaaccaattaagctacccaac 6871196  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 31141971 - 31142014
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  31141971 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 31142014  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 49294568 - 49294533
Alignment:
Q  361 tcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||| ||||||||||||||||||||||||||||    
T  49294568 tcccttaactcaaaccagttgagctacccaaccccc 49294533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 43225606 - 43225512
Alignment:
Q  292 aatggttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagct 385  Q
    ||||||||  || ||||||||||||||| |||||| | |||| | | || ||| ||||||||||| ||||||||||| |||||| ||| ||||||    
T  43225606 aatggttaactttttagattaatatttttctcctttgtccggttctgaatccatgacctccaacttcttttcccttaactcaaatcagctgagct 43225512  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 402
Target Start/End: Original strand, 50838794 - 50838824
Alignment:
Q  372 aaaccagttgagctacccaaccccctaatca 402  Q
    |||||||||||||||||||||||||||||||    
T  50838794 aaaccagttgagctacccaaccccctaatca 50838824  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 5267937 - 5268027
Alignment:
Q  285 aaatgtcaatggttagtttgttagattaatattttactcc---ttgcccgggtttaaacccaggacctccaactccttttcccttagctcaa 373  Q
    |||||| ||||||||||| ||||||||||| ||||  ||    |||||| ||||| |||||| ||||||||||||||| ||| |||||||||    
T  5267937 aaatgttaatggttagtt-gttagattaatttttttttctcttttgcccaggtttgaacccaagacctccaactccttatcctttagctcaa 5268027  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 27845463 - 27845415
Alignment:
Q  346 acctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||| |||||  ||| |||||||||||| |||||||||||||||||||    
T  27845463 acctctaactctcttttccttagctcaaatcagttgagctacccaaccc 27845415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 28308444 - 28308492
Alignment:
Q  346 acctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||| ||| || ||||||||||||||  ||||||||||||||||||    
T  28308444 acctccatctctttatcccttagctcaaattagttgagctacccaaccc 28308492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 305 - 394
Target Start/End: Original strand, 14239243 - 14239333
Alignment:
Q  305 ttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||||||||||||||| || | || |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  14239243 ttagattaatattttactcattcgtccaggtttaaacccaggacctccaactccttatcccctagctcagaccagttgagctacccaaccc 14239333  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 12020119 - 12020069
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttg 381  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  12020119 gggtttgaacccaggacctccaactccttatcccttaactcaaaccagttg 12020069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 5431674 - 5431627
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  5431674 gacctccaactccttatcccttagctcaaatcagctgagctacccaac 5431627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 36665254 - 36665347
Alignment:
Q  302 ttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    ||||||||||||||||| | ||||| | |||||||| ||||||| | | ||| || |||  ||||||||||||||||||| ||||||||||||||    
T  36665254 ttgttagattaatattt-attcctttgtccgggtttgaacccagtatccccatctacttaacccttagctcaaaccagttaagctacccaacccc 36665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 12136549 - 12136496
Alignment:
Q  338 aacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaa 391  Q
    ||||||| |||||||||| ||| | ||||||||||||||||||||| |||||||    
T  12136549 aacccagtacctccaacttcttattccttagctcaaaccagttgagttacccaa 12136496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 26055508 - 26055447
Alignment:
Q  333 gtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    |||| |||||| ||||||||||||||| ||||||| | ||||||||||||  ||||||||||    
T  26055508 gtttgaacccatgacctccaactccttatcccttatcacaaaccagttgaaatacccaaccc 26055447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 36548445 - 36548361
Alignment:
Q  300 gtttgttagattaatattttactccttgcccggg-tttaaacccaggacctccaa-ctccttttcccttagctcaaaccagttga 382  Q
    |||||||||| || ||||||  |||||||||||| ||| ||||||||||||| || ||| ||| |||||||||||||| ||||||    
T  36548445 gtttgttagactattatttttgtccttgcccggggtttgaacccaggacctctaaactcttttccccttagctcaaactagttga 36548361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 21634829 - 21634872
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  21634829 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 21634872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 34453773 - 34453840
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| | |||| ||||||| ||||||| ||||||| |||| | |||||| ||||||||||||||    
T  34453773 ccgggtttgatcccatgacctcctactccttatcccttaactcatatcagttgtgctacccaaccccc 34453840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 5589594 - 5589560
Alignment:
Q  364 cttagctcaaaccagttgagctacccaacccccta 398  Q
    |||||||| ||||||||||||||||||||||||||    
T  5589594 cttagctcgaaccagttgagctacccaacccccta 5589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 10995387 - 10995345
Alignment:
Q  354 ctccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  10995387 ctccttatcccttggctcaaaccaattgagctacccaaccccc 10995345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 24289235 - 24289172
Alignment:
Q  330 cgggtttaaacccaggacctccaactccttttcc----cttagctcaaaccagttgagctaccc 389  Q
    ||||||| |||||||| ||||||||||||| |||    ||||||||||||||||||| ||||||    
T  24289235 cgggtttgaacccaggtcctccaactccttgtcccttacttagctcaaaccagttgaactaccc 24289172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 36772822 - 36772864
Alignment:
Q  352 aactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  36772822 aactccttatctcttagctcaaactagttgagctacccaaccc 36772864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 20472430 - 20472381
Alignment:
Q  348 ctccaactccttttcccttagctcaaaccagttgagctacccaaccccct 397  Q
    ||||||||| || ||||||||||||||  |||||| ||||||||||||||    
T  20472430 ctccaactctttatcccttagctcaaagtagttgaactacccaaccccct 20472381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 2097173 - 2097082
Alignment:
Q  302 ttgttagattaatattttactcc-ttgcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacc 393  Q
    ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  2097173 ttgttagattaatattt-actcccttgtccgggtttgaacccaggacctccaactccttaacccttagctcaaactagttgagctacccaacc 2097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 8456867 - 8456800
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8456867 ccgggtttgaacccaggacatccaactccttatcccttagctcaaaccagttgagctacccaagcccc 8456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 25391104 - 25391011
Alignment:
Q  304 gttagattaatattttactccttgc-ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccct 397  Q
    ||||||||||| ||||||||||| | |||||||| ||||||  ||||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  25391104 gttagattaat-ttttactccttccgccgggtttgaacccactacctccaactctttttcccttagctcaaaccagatgagctacccaatcccct 25391011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 5251890 - 5251942
Alignment:
Q  339 acccaggacctccaactccttttcccttagctcaaaccagttgagctacccaa 391  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5251890 acccaggacctccaactccttttcccttggctcaaaccagttgagctacccaa 5251942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 30979885 - 30979818
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  30979885 ccgggtttgagcccaagacctccaactccttatcccttagctcaaaccagttgagctacccaatcccc 30979818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 38020462 - 38020376
Alignment:
Q  302 ttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacc 388  Q
    ||||||||||||||||| ||||||| | |||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||||    
T  38020462 ttgttagattaatattt-actccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagctacc 38020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 38272947 - 38273033
Alignment:
Q  302 ttgttagattaatattttactccttgcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccca 390  Q
    ||||||||||| |||||  ||| ||| |||||||| |||| || ||| |||||| ||| ||||||||||||||||||||||||||||||    
T  38272947 ttgttagattagtattt--ctcgttgtccgggtttgaaccaagaacccccaacttcttatcccttagctcaaaccagttgagctaccca 38273033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 29728814 - 29728862
Alignment:
Q  348 ctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  29728814 ctccaactccttaacccttagctcaaaccagttgagctacccaaccccc 29728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 6478490 - 6478420
Alignment:
Q  296 gttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttccctt 366  Q
    |||||||||||||||||||||||| |||||| | |||||||| ||| |||| ||||||||||||||||||||    
T  6478490 gttagtttgttagattaatatttt-ctcctttgtccgggtttgaacacaggccctccaactccttttccctt 6478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 38450761 - 38450695
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||| ||| |||||||  ||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  38450761 ccggatttgaacccagagcctccaacttcttaacccttagctcaaaccagttgagctacccaacccc 38450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 41594022 - 41594107
Alignment:
Q  301 tttgttagattaatattttactcc-ttgcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagcta 386  Q
    |||||||||||||||||| ||||| ||| | |||||| ||||||| |||||||||| |||  |||||||| ||||||||||||||||    
T  41594022 tttgttagattaatattt-actcccttgtctgggtttgaacccagtacctccaacttcttaacccttagcacaaaccagttgagcta 41594107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 42687680 - 42687614
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||||||| ||| ||||||||| |||||||| ||| |||| ||||||||||||||| ||||||||||    
T  42687680 ccgggtttgaactcaggacctcgaactccttatcctttagatcaaaccagttgagcgacccaacccc 42687614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 20228328 - 20228273
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagcta 386  Q
    |||||| |||||| |||||||||||||||  |||||||||||||| ||||||||||    
T  20228328 gggtttgaacccaagacctccaactccttaacccttagctcaaactagttgagcta 20228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 50289800 - 50289729
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccctaat 400  Q
    |||||||| |||| ||||||||||||| ||||| |||||| |||||||| || ||||||| |||||| ||||    
T  50289800 ccgggtttgaacctaggacctccaacttcttttgccttagttcaaaccacttaagctaccaaaccccttaat 50289729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 51285191 - 51285241
Alignment:
Q  343 aggacctccaactccttttcccttagctcaaaccagttgagctacccaacc 393  Q
    ||||||||||| || || ||||||||||||||| |||||||||||||||||    
T  51285191 aggacctccaattcattatcccttagctcaaactagttgagctacccaacc 51285241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 8600182 - 8600237
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagcta 386  Q
    |||||| ||||||||| ||||||||| |||| | |||| |||||||||||||||||    
T  8600182 gggtttgaacccaggatctccaactcatttttctttagttcaaaccagttgagcta 8600237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 9524703 - 9524640
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||||||| ||||||||||||   ||||||| | | ||||||||||||| ||||| |||||||||||    
T  9524703 ccgggtttgaacccaggacct---actccttattctttagctcaaaccacttgagttacccaacccc 9524640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 20016962 - 20017002
Alignment:
Q  301 tttgttagattaatattttactccttgcccgggtttaaacc 341  Q
    ||||||||||||||||||||||| |||| ||||||| ||||    
T  20016962 tttgttagattaatattttactctttgctcgggtttgaacc 20017002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 34257412 - 34257364
Alignment:
Q  344 ggacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    ||||||||||||  ||  |||||||||||||||||||| ||||||||||    
T  34257412 ggacctccaactatttagcccttagctcaaaccagttgtgctacccaac 34257364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 34702922 - 34702986
Alignment:
Q  330 cgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||| || |||| | |||||||||||| |||||| ||||||| ||| ||| |||||||||||    
T  34702922 cgggtttgaaaccagaaactccaactccttatcccttggctcaaatcagatgaactacccaaccc 34702986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 10635342 - 10635407
Alignment:
Q  327 gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10635342 gcccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagctacccaac 10635407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 6296913 - 6296848
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6296913 gggtttgaacccagaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 6296848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 29814963 - 29815024
Alignment:
Q  332 ggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacc 393  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  29814963 ggtttgaacctaggacctccaactccttatcccttagctcaaaccaattgagctacccaacc 29815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 10707766 - 10707860
Alignment:
Q  302 ttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccct 397  Q
    ||||||||||||| |||  |||||| | |||||||||||| ||| ||||| |||||||| |||||||||| ||| |||||||| || ||||||||||    
T  10707766 ttgttagattaattttt--ctccttcgtccgggtttaaactcagaacctcaaactccttatcccttagcttaaagcagttgagttatccaaccccct 10707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 9860776 - 9860831
Alignment:
Q  333 gtttaaacccaggacctccaactcctttt-cccttagctcaaaccagttgagctac 387  Q
    |||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||    
T  9860776 gtttgaactcaggacctccaactcctttaacccttagctcaaaccagttgagctac 9860831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 388
Target Start/End: Original strand, 35097227 - 35097284
Alignment:
Q  330 cgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacc 388  Q
    ||||||||||||||| |||||||||| ||||| ||||  ||||||||||||||||||||    
T  35097227 cgggtttaaacccag-acctccaacttctttttccttgactcaaaccagttgagctacc 35097284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 37157001 - 37157041
Alignment:
Q  356 ccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  37157001 ccttttcccttggctcaaaccagttgagctagccaaccccc 37157041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 15024829 - 15024868
Alignment:
Q  343 aggacctccaactccttttcccttagctcaaaccagttga 382  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  15024829 aggacctccaactccttatcccttagctcaaaccggttga 15024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 39735415 - 39735517
Alignment:
Q  296 gttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    |||||||||||| |||||||||| |||| || |  ||||||| || |||||||| ||| || |||||| ||| ||||||||| ||||||| | |||||||    
T  39735415 gttagtttgttatattaatattt-actcatttgttcgggtttgaatccaggacccccagcttcttttcacttggctcaaacccgttgagccatccaaccc 39735513  T
Q  395 ccta 398  Q
    ||||    
T  39735514 ccta 39735517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 16609721 - 16609758
Alignment:
Q  358 ttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  16609721 ttttccctaagctcaaaccagttgagttacccaacccc 16609758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 7367675 - 7367584
Alignment:
Q  304 gttagattaatattttactccttgcccgg-gtttaaacccaggacctccaactccttt-tcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||||||||||| |||||||   ||| |||| |||||| ||||||||||||||||  |||||||| ||||| |||||||| | |||||||    
T  7367675 gttagattaatattt-actccttcgtcggtgtttgaacccaagacctccaactcctttaacccttagcgcaaacaagttgagcaatccaaccc 7367584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 31674308 - 31674256
Alignment:
Q  338 aacccaggacctccaactccttttccc-ttagctcaaaccagttgagctaccc 389  Q
    ||||| |||| |||||||||||| ||| |||| ||||||||||||||||||||    
T  31674308 aacccgggacatccaactcctttaccccttagttcaaaccagttgagctaccc 31674256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 33084955 - 33085019
Alignment:
Q  332 ggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  33084955 ggttttaacccaggacctccaactccatatcccttagctcaaaccagttgagctacccaaccccc 33085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 33872805 - 33872905
Alignment:
Q  296 gttagtttgttagattaatattttactccttgcccgggtttaaacccaggacctccaactccttttccctt-agctcaaaccagttgagctacccaaccc 394  Q
    ||||||||||||||||||||||| | |||||     ||||| ||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  33872805 gttagtttgttagattaatattt-agtcctttgttcggtttgaacccaaaacctccaactccttttccctttagctcaaaccagttgagttacccaaccc 33872903  T
Q  395 cc 396  Q
    ||    
T  33872904 cc 33872905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 41437160 - 41437123
Alignment:
Q  361 tcccttagctcaaaccagttgagctacccaacccccta 398  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41437160 tcccttagctcaaaccagttgagctacccaacccccta 41437123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 32002119 - 32002199
Alignment:
Q  316 ttttactccttgcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||| ||||||||| ||  ||||||||  |||| ||||| ||||  ||||||||||||||||||||||||| |||||||||    
T  32002119 tttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgagctaaccaaccccc 32002199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 40778242 - 40778289
Alignment:
Q  348 ctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  40778242 ctccaactccttatcccttagttcaaaccagttcagctacccaacccc 40778289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 46976974 - 46977008
Alignment:
Q  362 cccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||||||||||||||||||||||||||||||    
T  46976974 cccttagctcaaaccagttgagctacccaaccccc 46977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 36025637 - 36025584
Alignment:
Q  343 aggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||    
T  36025637 aggacctccaactcattttcccttggctcaagccacttgagttacccaaccccc 36025584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 12272484 - 12272536
Alignment:
Q  344 ggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||||||  || ||| ||||||||||||||| ||||||||||||    
T  12272484 ggacctccaactccttaaccattaactcaaaccagttgagttacccaaccccc 12272536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 22812875 - 22812819
Alignment:
Q  338 aacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    |||| |||||||||||||||||  ||||||||| |||||||||||| ||| ||||||    
T  22812875 aaccgaggacctccaactccttaacccttagctgaaaccagttgaggtactcaaccc 22812819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 32089288 - 32089331
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  32089288 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 32089331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 32096761 - 32096804
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  32096761 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 32096804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 34779209 - 34779163
Alignment:
Q  351 caactccttt--tcccttagctcaaaccagttgagctacccaacccc 395  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  34779209 caactcctttaatcccttagctcaagccagttgagctacccaacccc 34779163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 36062553 - 36062604
Alignment:
Q  344 ggacctccaactcctttt-cccttagctcaaaccagttgagctacccaaccc 394  Q
    |||||||| ||||||||  |||||||||||||| ||||||||||||||||||    
T  36062553 ggacctcctactcctttaacccttagctcaaacaagttgagctacccaaccc 36062604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 39128515 - 39128558
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  39128515 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 39128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 39478530 - 39478487
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  39478530 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 39478487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 41706652 - 41706695
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  41706652 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 41706695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 41812234 - 41812191
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  41812234 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 41812191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 42713637 - 42713578
Alignment:
Q  335 ttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    |||||||| ||||||| ||||| ||  ||||||||||||| |||||||||| ||||||||    
T  42713637 ttaaaccctggacctctaactcgttaacccttagctcaaatcagttgagctgcccaaccc 42713578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 43735761 - 43735827
Alignment:
Q  298 tagtttgttagattaatattttactcc-ttgcccgggtttaaacccaggacctccaactccttttccc 364  Q
    |||||||||||||||||| |||||||| ||| | |||||| ||||||||| ||||||| |||||||||    
T  43735761 tagtttgttagattaata-tttactcctttgtctgggtttcaacccaggatctccaaccccttttccc 43735827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 22878486 - 22878432
Alignment:
Q  340 cccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||||||||||||||||  ||||||| | |||||||||||| ||| ||||||    
T  22878486 cccaggacctccaactccttaacccttagttgaaaccagttgaggtactcaaccc 22878432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 382
Target Start/End: Complemental strand, 37830011 - 37829930
Alignment:
Q  302 ttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttt-tcccttagctcaaaccagttga 382  Q
    ||||||||||||||| | ||||||| | |||||||| || ||||||| ||||||||||||  ||||||| |||||||||||||    
T  37830011 ttgttagattaatatct-actccttcgtccgggtttgaagccaggacttccaactcctttaacccttagatcaaaccagttga 37829930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 44184249 - 44184318
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccctaat 400  Q
    |||||| ||| || |||||||||||| ||  ||||||| |||||||||||||| ||| ||||||| ||||    
T  44184249 gggtttgaacacatgacctccaactcattaacccttagttcaaaccagttgagttactcaaccccataat 44184318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 38375044 - 38375012
Alignment:
Q  364 cttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||||||| ||||||||||||||||||||    
T  38375044 cttagctcaaacgagttgagctacccaaccccc 38375012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 26009852 - 26009785
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||    
T  26009852 ccgggtttgaacccaggacctccaactctttatcccttggctcaaaccagttgagctacccaaccccc 26009785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 10429882 - 10429947
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||| |||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  10429882 gggtttgaaccaaagacctcctactccttatcccttagctcaaaccagttgagctacccaaccccc 10429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 32103637 - 32103573
Alignment:
Q  332 ggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||| |||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  32103637 ggtttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaaccccc 32103573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 1652597 - 1652530
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| |||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||    
T  1652597 ccgggtttgaacctaggacctccaatttcttatcccttagctcaaaccagttgagctacccaatcccc 1652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 14195202 - 14195247
Alignment:
Q  344 ggacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  14195202 ggacctccaactccttaacccttagctcaaaccagttgagctaccc 14195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 26849265 - 26849310
Alignment:
Q  352 aactccttt-tcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26849265 aactcctttatcccttagctcaaaccagttgagctacccaaccccc 26849310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 392
Target Start/End: Complemental strand, 8734527 - 8734464
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaac 392  Q
    |||| ||| ||||||  |||||||||||||| ||||| |||||||||||||| |||||||||||    
T  8734527 ccggatttgaacccaatacctccaactccttatccctcagctcaaaccagttaagctacccaac 8734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 36959417 - 36959382
Alignment:
Q  361 tcccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||||||||||||||||||||||||||    
T  36959417 tcccttagctcaaaccagttgagctacccaaccccc 36959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 16452245 - 16452277
Alignment:
Q  362 cccttagctcaaaccagttgagctacccaaccc 394  Q
    |||||||||||||||||||||||||||||||||    
T  16452245 cccttagctcaaaccagttgagctacccaaccc 16452277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 15646854 - 15646806
Alignment:
Q  346 acctccaactccttttcccttagctcaaaccagttgagctacccaaccc 394  Q
    ||||||||||||||  |  |||||||||||||||||||||||| |||||    
T  15646854 acctccaactccttaacatttagctcaaaccagttgagctaccgaaccc 15646806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 28590389 - 28590456
Alignment:
Q  329 ccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  28590389 ccgggtttgaactcaggacctccaacaccttgtcccttagctcaaaccagttgagttacccaaccccc 28590456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 382
Target Start/End: Complemental strand, 51569905 - 51569819
Alignment:
Q  296 gttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttga 382  Q
    ||||||||||||||||||||| || |||||| | ||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  51569905 gttagtttgttagattaatatctt-ctccttcgtccgagtttgaacccagaacctccaactccttttcccttagctcaaaccaattga 51569819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 8790020 - 8790085
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||| |||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||    
T  8790020 gggtttgaacccaggacctccaactctgtgtcccttagctcaaaccagttgagctgcccaaccccc 8790085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 42529481 - 42529433
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagctacccaacc 393  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  42529481 gacctccaactccttatcccttagctcaaaccagctgagctacccaacc 42529433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 50574794 - 50574842
Alignment:
Q  330 cgggtttaaacccaggacctccaactccttttcccttagctcaaaccag 378  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  50574794 cgggtttcaacccaggacctccaactccttatcccttagctcaaaccag 50574842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 54135760 - 54135692
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccctaa 399  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||    
T  54135760 gggtttgaacccaggacctccaattccttttctcttagctcaaatcattaaagctacccaaccccctaa 54135692  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 24446954 - 24446866
Alignment:
Q  296 gttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    ||||||||||||||||||| |||| |||||| | ||| |||| | |||||||||||||      |||||||||||||||||||||||||||||||    
T  24446954 gttagtttgttagattaatgtttttctccttcgtccgagtttgatcccaggacctcca------tttcccttagctcaaaccagttgagctaccc 24446866  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 24465135 - 24465047
Alignment:
Q  296 gttagtttgttagattaatattttactcctt-gcccgggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    ||||||||||||||||||| |||| |||||| | ||| |||| | |||||||||||||      |||||||||||||||||||||||||||||||    
T  24465135 gttagtttgttagattaatgtttttctccttcgtccgagtttgatcccaggacctcca------tttcccttagctcaaaccagttgagctaccc 24465047  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 28409459 - 28409521
Alignment:
Q  333 gtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||| ||||| ||||||||||||| | |||||||||||||| ||||||||| |||||||||||    
T  28409459 gtttgaacccgggacctccaactcatcttcccttagctcaacccagttgagttacccaacccc 28409521  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 37897649 - 37897584
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacccaaccccc 396  Q
    |||||| ||||||||||||||||||| || ||| | ||| ||| ||||||||||||||||| ||||    
T  37897649 gggtttgaacccaggacctccaactctttatccttcagcccaatccagttgagctacccaatcccc 37897584  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 38044544 - 38044587
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  38044544 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 38044587  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 48838060 - 48838017
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  48838060 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 48838017  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 50152427 - 50152384
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  50152427 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 50152384  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 22729958 - 22729992
Alignment:
Q  364 cttagctcaaaccagttgagctacccaacccccta 398  Q
    |||||||| ||||||||||||||||||||||||||    
T  22729958 cttagctcgaaccagttgagctacccaacccccta 22729992  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 21498455 - 21498496
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagcta 386  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  21498455 gacctccaactcgttatcccttagctcaaactagttgagcta 21498496  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 54913721 - 54913774
Alignment:
Q  344 ggacctccaactcctttt-cccttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||| |||  |||||||||||||| ||||||||||||||| ||||    
T  54913721 ggacctccaactcttttaacccttagctcaaactagttgagctacccaaacccc 54913774  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 223096 - 223064
Alignment:
Q  364 cttagctcaaaccagttgagctacccaaccccc 396  Q
    ||||||||||||||||||||||| |||||||||    
T  223096 cttagctcaaaccagttgagctatccaaccccc 223064  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 34073314 - 34073350
Alignment:
Q  282 ggaaaatgtcaatggttagtttgttagattaatattt 318  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  34073314 ggaaaatgttaatagttagtttgttagattaatattt 34073350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 388
Target Start/End: Complemental strand, 31957938 - 31957881
Alignment:
Q  331 gggtttaaacccaggacctccaactccttttcccttagctcaaaccagttgagctacc 388  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  31957938 gggtttcaacccaggacctccaactccttatcccttagctcaaaccagtcgagctacc 31957881  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 6959027 - 6958975
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagctacccaaccccct 397  Q
    |||||||| |||||| ||| |||||||||||||| |||||||||||| |||||    
T  6959027 gacctccatctccttatcctttagctcaaaccagctgagctacccaaacccct 6958975  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 21537513 - 21537469
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagctaccc 389  Q
    |||||||||||||||  |||||||||||||| |||||||||||||    
T  21537513 gacctccaactccttaacccttagctcaaactagttgagctaccc 21537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 26217257 - 26217300
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttctatgcatcgt 101  Q
    |||||||||||||||| |||||||||||||||||| || |||||    
T  26217257 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgt 26217300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 29169578 - 29169533
Alignment:
Q  345 gacctccaactccttttcccttagctcaaaccagttgagctaccca 390  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||||    
T  29169578 gacctccaactccttatcccttggctcaaacaggttgagctaccca 29169533  T

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Target: scaffold0451 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 7640 - 7686
Alignment:
Q  349 tccaactccttttcccttagctcaaaccagttgagctacccaacccc 395  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  7640 tccaactcttttacccttaggtcaaaccagttgagctacccaacccc 7686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 4912 - 4946
Alignment:
Q  58 gtgtcatccttgcgcatgggccatgctaatcttct 92  Q
    ||||||||||||||||||||||||||| |||||||    
T  4912 gtgtcatccttgcgcatgggccatgctgatcttct 4946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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