View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_48 (Length: 430)
Name: NF11788_low_48
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 55017090 - 55017490
Alignment:
| Q |
12 |
gagatgaagatgatgccgtttggtgctgggaggaggatttgtccagcatggacattagggactttgcatataaacatgttgttggcaaaaatggttcttg |
111 |
Q |
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| T |
55017090 |
gagatgaagatgatgccgtttggtgctgggaggaggatttgtccagcatggacattagggactttgcatataaacatgttgttggccaaaatggttcttg |
55017189 |
T |
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| Q |
112 |
cttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttcc |
211 |
Q |
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| T |
55017190 |
cttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttcc |
55017289 |
T |
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| Q |
212 |
tagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatactacaatgctagtaatttgttaactaaattaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
55017290 |
tagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatattgcaatgctagtaatttgttaactaaattaa |
55017389 |
T |
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| Q |
312 |
gagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttcattttggtggtgattaatattgctggtttaaatgtataatac |
411 |
Q |
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| T |
55017390 |
gagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttctttttggtggtgattaatattgctggtttaaatgtataatac |
55017489 |
T |
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| Q |
412 |
t |
412 |
Q |
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| T |
55017490 |
t |
55017490 |
T |
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Back To:
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 26494896 - 26494939
Alignment:
| Q |
12 |
gagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
55 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||| |
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| T |
26494896 |
gagataaagatgatgccgtttggagcagggaggaggatttgtcc |
26494939 |
T |
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