View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_49 (Length: 423)
Name: NF11788_low_49
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 13773854 - 13774248
Alignment:
| Q |
14 |
agatgaattaaatagatgtttcatgctaaactacaattagcattagtagagtaactagtaataaaaatttaagctagataagcaagaacaccaactaaag |
113 |
Q |
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| T |
13773854 |
agatgaattaaatagatgtttcatgctaaactacaattagcattagtagagtaactagtaataaaaatttaagctagataagcaagaacaccaactaaag |
13773953 |
T |
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| Q |
114 |
gtgcaacagaaacagtagttggttctcctaattggtaatcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
13773954 |
gtgcaacagaaacagtagttggttctcctaattggtagtcatttctattatccgtaaaatcatcattttgatctggactcacaattgctccttctaatgt |
13774053 |
T |
|
| Q |
214 |
attagggtttggtgcatttttgttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctcta |
313 |
Q |
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| T |
13774054 |
attagggtttggtgcatttttattgaaccatttttcaaagccatctttgcatcctaatggtgaactatcttgcttgattgatataattgaagctcctcta |
13774153 |
T |
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| Q |
314 |
tgatgaatttgttgtggataatttgatccatatcccaccatgtaactcatttgttttggattagaacccaatatgtagtccacctataatgttgt |
408 |
Q |
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| T |
13774154 |
tgatgaatttgttgtggataatttgatccatatcccaccatgtaactcatctgttttggattagaacccaatatgtagtccacctataatgttgt |
13774248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 62 - 406
Target Start/End: Original strand, 13764053 - 13764398
Alignment:
| Q |
62 |
gagtaactagtaataaaaatttaagctagat-aagcaagaacaccaactaaaggtgcaacagaaacagtagttggttctcctaattggtaatcatttcta |
160 |
Q |
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| T |
13764053 |
gagtaactaggaacacaaaattaggctagattaagcaagaacaccaactaaaggtgcaacagaagtagtagttggctcccctaattgaaaatcattccta |
13764152 |
T |
|
| Q |
161 |
ttatccgtaaaatcatcattttgatctggactcacaattgctccatccaatgtattagggtttggtgcatttttgttgaaacatttctcaaaaccatctt |
260 |
Q |
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|||| |||||| ||||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||||| ||||| ||||| | || |||||||| |
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| T |
13764153 |
ctatcagtaaaaccatcattttgatctgaactcacaactgctccttctaatatattagggtttggtgcatttttattgaaccatttttgaataccatctt |
13764252 |
T |
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| Q |
261 |
tgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgttgtggataatttgatccatatcccaccatgtaact |
360 |
Q |
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| T |
13764253 |
gacatgtaactggtgcattatcatctttgattgatacaattgatgatcctctatgatgaatttgttttggataatttgatccatatcccaccatgtaact |
13764352 |
T |
|
| Q |
361 |
catttgttttggattagaacccaatatgtagtccacctataatgtt |
406 |
Q |
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||| | | |||||||||||||||| |||||||||| ||| |||||| |
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| T |
13764353 |
catatttcttggattagaacccaaaatgtagtccatctaaaatgtt |
13764398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 17264568 - 17264695
Alignment:
| Q |
236 |
ttgaaacatttctcaaaaccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctatgatgaatttgttgtggataat |
335 |
Q |
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||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17264568 |
ttgaaccatttttcaaagccatctttgcatcctactggtgaactatcttgtttgattgatacaattgaagctcctctacgatgaatttgttgtggataac |
17264667 |
T |
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| Q |
336 |
ttgatccatatcccaccatgtaactcat |
363 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
17264668 |
ttgttccatatcccaccatgtaactcat |
17264695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 16855040 - 16855002
Alignment:
| Q |
63 |
agtaactagtaataaaaatttaagctagataagcaagaac |
102 |
Q |
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| T |
16855040 |
agtaactagtaa-aaaaatttaagctagataagcaagaac |
16855002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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