View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_5 (Length: 793)
Name: NF11788_low_5
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 10 - 775
Target Start/End: Original strand, 47197791 - 47198556
Alignment:
| Q |
10 |
agaagcaaaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
109 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197791 |
agaatcaaaggtggatatgggtggagagtatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
47197890 |
T |
|
| Q |
110 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197891 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
47197990 |
T |
|
| Q |
210 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
309 |
Q |
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| T |
47197991 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcact |
47198090 |
T |
|
| Q |
310 |
actcaataattataatagcattaattattaataatgaatcattttaatgcataatgcagccgaatcaatgttaaaatattaaaccaaatacatgaatttt |
409 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
47198091 |
actcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgttaaaatattaaaccaaatacataaatttt |
47198190 |
T |
|
| Q |
410 |
tattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaat |
509 |
Q |
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| T |
47198191 |
tattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaat |
47198290 |
T |
|
| Q |
510 |
gatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtacttc |
609 |
Q |
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| T |
47198291 |
gatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctatgcactttagtgtctgtatattttgtggacaaagctgggagaagggtgctct |
47198390 |
T |
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| Q |
610 |
tattggaagcatgtgtacaaatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggcta |
709 |
Q |
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| T |
47198391 |
tattggaagcatgtgtgcaaatgtttgtgtcccaagttgtaattggcatagtgcttggggctaaactccaagatcactcagatagcttaagcaaaggcta |
47198490 |
T |
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| Q |
710 |
tgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccact |
775 |
Q |
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| T |
47198491 |
tgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccact |
47198556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 430 - 775
Target Start/End: Original strand, 47185672 - 47186017
Alignment:
| Q |
430 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
529 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
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| Q |
530 |
agtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtacttctattggaagcatgtgtacaa |
629 |
Q |
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| T |
47185772 |
agtgatcacaggaggtgtgaatgtcctctgcaccttagtgtctgtatattttgtggacaaagttgggagaagggtacttctattggaagcatgtgtacaa |
47185871 |
T |
|
| Q |
630 |
atgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtta |
729 |
Q |
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| T |
47185872 |
atgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtta |
47185971 |
T |
|
| Q |
730 |
tggtatgcacatttgttgcatcttttgcatggtcatggggtccact |
775 |
Q |
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| T |
47185972 |
tggtatgcacatttgttgcatcttttgcatggtcatggggtccact |
47186017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 47184916 - 47185211
Alignment:
| Q |
17 |
aaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtct |
116 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47184916 |
aaggtggatatgggtggagaatatcattggccggagcaatcattccagcagttatgcttacagtggggtctctcatagtggatgatactcccaacagtct |
47185015 |
T |
|
| Q |
117 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185016 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
47185115 |
T |
|
| Q |
217 |
aaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattgatcattgccatctgtatgcaggtcactact |
312 |
Q |
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||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| |
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| T |
47185116 |
aaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttgataattgccatatgtatgcaggtaactact |
47185211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
438 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
526 |
Q |
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||||||| ||| ||||||||||| || ||||||||||||||||| |||||| ||| | |||||| | ||||||||| |||||||||| |
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| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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