View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_50 (Length: 420)
Name: NF11788_low_50
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_50 |
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| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 3851751 - 3851353
Alignment:
| Q |
19 |
gagaaaatgcaacctcaattccaatcattcaaccacttcccaaatttaacaactctttcagtgcttttggtttggtgaggataatcgacaaccctttaac |
118 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3851751 |
gagaaaacgcaacttcaattccaatcattcaaccacttcccaaatttaacaactctttcagtgcttttggtttggtgaggataatcgacaaccctttaac |
3851652 |
T |
|
| Q |
119 |
cttgacagcaaacttgacctcaaagttgttaggcagagctcaagggttttatgctgctacctcgcaaaccgagctcgattttcttatggttcagaacttt |
218 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3851651 |
cttgacaccaaacttgacctcaaaattgttaggtagagctcaagggttttatgcggctacctcacaaaccgagctcgattttcttatggttcagaacttt |
3851552 |
T |
|
| Q |
219 |
gccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacgataaggttagagaattgcctgtgatcggtggtagcg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3851551 |
gccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacgataaggttagagagttgcctgtgatcggtggtagcg |
3851452 |
T |
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| Q |
319 |
gagttttccgatttgctaagggatatgctgaagctagaacaatctcttttgatttcataactggggataccgtggttgaatacaatgtctctgctactc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
3851451 |
gagttttccgatttgctaagggatatgctgaagctagaacaatctcttttgatttcataactggggataccgtggttgaatacaatgtctatgttactc |
3851353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 183 - 355
Target Start/End: Complemental strand, 3789189 - 3789018
Alignment:
| Q |
183 |
caaaccgagctcgattttcttatggttcagaactttgccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacg |
282 |
Q |
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||||||| |||| ||||||||||| || ||||||||| ||||||||||||||||||||||| || ||||||||||| || |||| ||| || || ||| |
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| T |
3789189 |
caaaccgtgctcaattttcttatgattatgaactttgctttgtttgaaggaaagtataatggaagcaccattactatttcaggaa-gaatgttgctaaca |
3789091 |
T |
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| Q |
283 |
ataaggttagagaattgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaagctag |
355 |
Q |
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| T |
3789090 |
ataaggttagagaaatgcctgtgattggtggaagtggagtttttaggtttgctaagggatatgctgaagctag |
3789018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 3845149 - 3844975
Alignment:
| Q |
176 |
tacctcgcaaaccgagctcgattttcttatggttcagaactttgccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtc |
275 |
Q |
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|||||| ||||| ||||| ||||||||||| | ||| ||||| || |||||||| || |||||||| || || |||||||||| ||||| || | |
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| T |
3845149 |
tacctcacaaactgagcttaattttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgat |
3845050 |
T |
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| Q |
276 |
gcgaacgataaggttagagaattgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaa |
350 |
Q |
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| T |
3845049 |
gcatatgaaaaggttagagaaatgcctgtgattggtggaagtgggctttttagatttgctaagggatatgctgaa |
3844975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 3766963 - 3766892
Alignment:
| Q |
283 |
ataaggttagagaattgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaagcta |
354 |
Q |
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|||| |||||||| |||||||||| |||||||| ||||||||| ||||||||| || ||||||||||||| |
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| T |
3766963 |
ataaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagcta |
3766892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 3776685 - 3776557
Alignment:
| Q |
226 |
ttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacgataaggttagagaattgcctgtgatcggtggtagcggagtttt |
325 |
Q |
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||||||||||||||||||| |||||||||||||||| || ||||| || |||||||||| ||| ||||||| | |||||||| ||| |||| |
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| T |
3776685 |
ttgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttggtggtagtggactttt |
3776586 |
T |
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| Q |
326 |
ccgatttgctaagggatatgctgaagcta |
354 |
Q |
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| T |
3776585 |
cagatttgctagaggttatgctgaagcta |
3776557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 3745808 - 3745773
Alignment:
| Q |
226 |
ttgaaggaaagtataatgggagtaccattactatct |
261 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
3745808 |
ttgaaggaaagtataatgggagtactattactatct |
3745773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 3755435 - 3755364
Alignment:
| Q |
283 |
ataaggttagagaattgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaagcta |
354 |
Q |
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|||| |||||||| |||||||||| |||||||| ||| ||||| ||||||||| || ||||||||||||| |
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| T |
3755435 |
ataaagttagagagatgcctgtgattggtggtagtggatttttcagatttgctagaggttatgctgaagcta |
3755364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 3751639 - 3751590
Alignment:
| Q |
212 |
gaactttgccttgtttgaaggaaagtataatgggagtaccattactatct |
261 |
Q |
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| T |
3751639 |
gaactttgctttcattgaaggaaagtataatggtagtacaattactatct |
3751590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 350
Target Start/End: Original strand, 9999 - 10173
Alignment:
| Q |
176 |
tacctcgcaaaccgagctcgattttcttatggttcagaactttgccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtc |
275 |
Q |
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|||||| ||||| ||||| ||||||||||| | ||| ||||| || |||||||| || |||||||| || || |||||||||| ||||| || | |
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| T |
9999 |
tacctcacaaactgagcttaattttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgat |
10098 |
T |
|
| Q |
276 |
gcgaacgataaggttagagaattgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaa |
350 |
Q |
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|| | || |||||||||||| |||||||||| ||||| || || |||| ||||||||||||||||||||||| |
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| T |
10099 |
gcatatgaaaaggttagagaaatgcctgtgattggtggaagtgggctttttagatttgctaagggatatgctgaa |
10173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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