View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_51 (Length: 417)
Name: NF11788_low_51
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1508760 - 1508968
Alignment:
| Q |
1 |
ctcttgtctcagttcttttattctcaccttctttctctttatggaacaaaggggttaaactcttcacccatgactcatacctttaccattctccctcgtt |
100 |
Q |
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| T |
1508760 |
ctcttgtctcagttcttttattctcaccttctttctctttatggaacaaaggagttaaactcttcacccatgactcatacctttaccattctccctcgtt |
1508859 |
T |
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| Q |
101 |
aaggaatcagcaagataagttttacttgctggacattcattttgtgaatttttcattatggaaaaaatagatatttttatattatgtggttaagttcaaa |
200 |
Q |
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| T |
1508860 |
aaggaatcagcaagataagttttacttgctggacattcattttgtgaatttttcattatggaaaaaatagatatttttatattatgtggttaagttcaaa |
1508959 |
T |
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| Q |
201 |
gaatgtaga |
209 |
Q |
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||||||||| |
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| T |
1508960 |
gaatgtaga |
1508968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 1509010 - 1509171
Alignment:
| Q |
251 |
cttgcaattgcaatatacaaaagctcacttaagagtttaaaaatggatgcatacttgcaatttgtaacaacacacttttgcatcgcaatccatccatagc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1509010 |
cttgcaattgcaatatacaaaagctcacttaagagtttaaaaatggatgcatacttgcaatttgtaacaacacacttttgcatcgcaatccatccatagc |
1509109 |
T |
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| Q |
351 |
gatcaggtatacattatttaagtttgcttttctttttaaattgttcctgtttctctgcttct |
412 |
Q |
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| T |
1509110 |
gatcaggtatacattatttaattttgcttttctttttaaattgttcctgtttctttgcttct |
1509171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1503536 - 1503577
Alignment:
| Q |
1 |
ctcttgtctcagttcttttattctcaccttctttctctttat |
42 |
Q |
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| T |
1503536 |
ctcttgtctcagttcttttattctcaccttctttctctttat |
1503577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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