View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_53 (Length: 408)
Name: NF11788_low_53
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Original strand, 47291121 - 47291493
Alignment:
| Q |
12 |
gagaagaacatgatttttcgttccattgtctgctcgattgctttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
111 |
Q |
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| T |
47291121 |
gagaagaacatgatttttggttccattgtctgctcgattgatttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
47291220 |
T |
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| Q |
112 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
211 |
Q |
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| T |
47291221 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
47291320 |
T |
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| Q |
212 |
cctcttaacaacagggctaaaagtttctacataatataatccttcagtttgtgtaaatccttttgctatgattacgtgcctgccttataatcctacataa |
311 |
Q |
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| T |
47291321 |
cctcttaacaacagggctaaaagtttctagataatataatccttcagtttgtgtaaatccttttgctatgattacgtgcctgccttataatcctacataa |
47291420 |
T |
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| Q |
312 |
ttatacaacgcagaaacacttgagattctacaatggatttattaacagaaagagtagaatcagaaactttgagcaatttc |
391 |
Q |
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| T |
47291421 |
ttatacaacaca-aaacac------ttctacaatggatttatcaacagaaagagtagaatcagaaactttgagcaatttc |
47291493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 47298053 - 47298141
Alignment:
| Q |
303 |
cctacataattatacaacgcagaaacacttg-agattctacaatggatttattaacagaaagagtagaatcagaaactttgagcaattt |
390 |
Q |
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| T |
47298053 |
cctacataattatacaaagcagaaacactaggagattctacaagggacttattaacataaagagtagaatcagaaactttgagcgattt |
47298141 |
T |
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