View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_54 (Length: 403)
Name: NF11788_low_54
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_54 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 69 - 403
Target Start/End: Complemental strand, 48121416 - 48121082
Alignment:
| Q |
69 |
acaattaacggtttggttcaattttacctttagcggtttagttcggtttgatttttcttcctgaactgaaccctgaatagtaataatgttaccacatact |
168 |
Q |
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| T |
48121416 |
acaattaacggtctggttcaattttacctttagcggtttagtttggtttgatttttcttcctgaactgaaccctgaacagtaataatgttaccacatact |
48121317 |
T |
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| Q |
169 |
ccttatggtctcaaatataaacnnnnnnngtctatatacaactaatccaagtttataccaaacacataaacttttattttcttatatttgagctcggagg |
268 |
Q |
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| T |
48121316 |
ccttatggtctcaaatataaacaaaaaaagtctatatacaactaatccaagtttataccaaacacataaacttttattttcttatatttgagctcggagg |
48121217 |
T |
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| Q |
269 |
agtaatgtttacactgcattttttggactaacagtgaaaaatttatttataggtggtaggtccccgtttacatggtatccacaatcatatgtcgatcaag |
368 |
Q |
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| T |
48121216 |
agtaatgtttacactgcattttttggactaacagtgaaaaatttatttataggtggtaggtccccgtttacatggtatccacaatcatatgtcgatcaag |
48121117 |
T |
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| Q |
369 |
ttccaatgacagacatgaacatgagagccaatagc |
403 |
Q |
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| T |
48121116 |
ttccaatgacagacatgaacatgagagccaatagc |
48121082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 48121454 - 48121405
Alignment:
| Q |
11 |
cagaacctgtgaacaaaccttcatactggttcgggacaacaattaacggt |
60 |
Q |
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| T |
48121454 |
cagaaccagtgaacaaaccttcatactggttcgggacaacaattaacggt |
48121405 |
T |
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