View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_55 (Length: 402)

Name: NF11788_low_55
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_55
NF11788_low_55
[»] chr8 (6 HSPs)
chr8 (16-402)||(8705995-8706380)
chr8 (54-195)||(8691370-8691511)
chr8 (54-229)||(8744652-8744817)
chr8 (153-231)||(8724900-8724978)
chr8 (287-348)||(8691629-8691690)
chr8 (242-274)||(8725001-8725033)


Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 8705995 - 8706380
Alignment:
Q  16 gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8705995 gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaag 8706094  T
Q  116 gaattcctgatgtaaggagttcatccttggtaaatgatgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaac 215  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  8706095 gaattcctgatgtaaggagttcatccttgataaatgat-atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaac 8706193  T
Q  216 ttatatttgttttataggtgagtgaaactttgccagaaataaatatggaatcaatatttcaggcacaggaagaaaatttatttcctttctcaccacaaca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8706194 ttatatttgttttataggtgagtgaaactttgccagaaataaatatggaatcaatatttcaggcacaggaagaaaatttctttcctttctcaccacaaca 8706293  T
Q  316 gtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacgatgcctattttagaaatgacaacatcattgt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8706294 gtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacgatgcctattttagaaatgacaacatcattgt 8706380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 8691370 - 8691511
Alignment:
Q  54 tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat 153  Q
    ||||||||||||||| ||| ||||||||||||| ||||| |||| ||||||||   |||||||||||||||||||||||| ||||| |||| |||||||     
T  8691370 tgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgac 8691469  T
Q  154 gatagaaattttgagaacaaagttttggatttaaacctttct 195  Q
     ||||||||||||| |||||||||||   |||||||||||||    
T  8691470 aatagaaattttgaaaacaaagttttaattttaaacctttct 8691511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 8744652 - 8744817
Alignment:
Q  54 tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat 153  Q
    ||||| ||||||| |||||||||||||||| ||| |  | |||| ||||||||  || ||||||||| |  ||||||| ||||||||||||             
T  8744652 tgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttg--------- 8744742  T
Q  154 gatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtttta 229  Q
     ||||||||||||| ||||||||||||| |||| ||  ||  |||||| ||||||| |||||||||| ||||||||    
T  8744743 -atagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta 8744817  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
Q  153 tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgttttata 231  Q
    ||||||||||||| | | | |||| |||| |||| ||||||| |||||| |||||||||||||||||| ||||||||||    
T  8724900 tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata 8724978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 8691629 - 8691690
Alignment:
Q  287 gaaaatttatttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatc 348  Q
    |||||||  |||||||||||| || | ||| |||||||||||||||||||| | ||||||||    
T  8691629 gaaaattactttcctttctcaacataccagccttcaatctctgaaaatgagaacgaagtatc 8691690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 8725001 - 8725033
Alignment:
Q  242 actttgccagaaataaatatggaatcaatattt 274  Q
    ||||||||||||||||||||| |||||||||||    
T  8725001 actttgccagaaataaatatgcaatcaatattt 8725033  T

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