View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_58 (Length: 387)
Name: NF11788_low_58
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 43602403 - 43602761
Alignment:
| Q |
18 |
atatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatcataacattaaccaatactacttactacacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602403 |
atatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcatcataacattaaccaatactacttactacacat |
43602502 |
T |
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| Q |
118 |
caaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaagaaatatcaatggactctcccaactcacctgattttgcttttacat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602503 |
caaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaagaaatatcaatggactctcccaactcacctgattttgcttttacat |
43602602 |
T |
|
| Q |
218 |
catcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctcaaaactctcatgtccaactttctcacgcag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602603 |
catcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttctcaaaactctcatgtccaactttctcacgcag |
43602702 |
T |
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| Q |
318 |
tcttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602703 |
tcttcaaaactctccagtttcatctcctcaacatcactattttcccactaagctctctg |
43602761 |
T |
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