View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_60 (Length: 384)
Name: NF11788_low_60
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 114 - 367
Target Start/End: Complemental strand, 4118910 - 4118646
Alignment:
| Q |
114 |
cagtgtaggagacatcagtatcacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaa-----------gtactgtctaaga |
202 |
Q |
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| T |
4118910 |
cagtgtaggagacatcagtaccacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaatgtcttactatgtactgtctaaga |
4118811 |
T |
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| Q |
203 |
atgaaaagttattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctgg |
302 |
Q |
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| T |
4118810 |
atgaaaagttattttatttagcatgcatattttttattgatgtgccaagatgcttgcattaagatttgtcactcttttcctttctattttttatttatgg |
4118711 |
T |
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| Q |
303 |
aatttagttttgttgggcagtgtaggagatttctctttctgggtgtaagtcccaaaactgcttta |
367 |
Q |
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| T |
4118710 |
aatttagttttgttgggcagtgtaggagatttctctttctgggtgtaagtcccaaaactgcttta |
4118646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 4119035 - 4118946
Alignment:
| Q |
20 |
cagtgctcataaaagaaaggcatttctctaaaataagaagtgtaaactaaaatgtgtgagcaggctgctatgatcagttaagaatattct |
109 |
Q |
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| T |
4119035 |
cagtgctcataaaagaaaggcatttctctaaaataagaagtgtaaactaaaatgtgtgagcaggctgctatgatcagttaagaatattct |
4118946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 4347094 - 4347224
Alignment:
| Q |
212 |
tattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctggaatttagtt |
311 |
Q |
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| T |
4347094 |
tattttgtttagcatgcatcttttttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggtt |
4347193 |
T |
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| Q |
312 |
ttgttgggcagtgtaggagatttctctttct |
342 |
Q |
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| T |
4347194 |
ttgctggctagtgtaggagatttctctttct |
4347224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 4363520 - 4363650
Alignment:
| Q |
212 |
tattttgtttatcatgcatattttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctggaatttagtt |
311 |
Q |
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| T |
4363520 |
tattttgtttagcatgcatctttttcattggtgtggcaggatgcttgcattgagaattgtcattcttttcctttctatttatgattggtgtgatttggtt |
4363619 |
T |
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| Q |
312 |
ttgttgggcagtgtaggagatttctctttct |
342 |
Q |
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| T |
4363620 |
ttgctggctggtgtaggagatttccctttct |
4363650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 4121964 - 4121831
Alignment:
| Q |
117 |
tgtaggagacatcagtatcacattaagtaaataagtggcaggatagaagaactgcagtaacatattatataaagtactgtctaagaatgaaaagttattt |
216 |
Q |
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| T |
4121964 |
tgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgttatactatctaagaagtaagaatgaagaattattt |
4121865 |
T |
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| Q |
217 |
tgtttatcatgcatattttttattggtgtgccaa |
250 |
Q |
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| T |
4121864 |
tgtttagcatgcatatttttcattggtatgccaa |
4121831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 351
Target Start/End: Complemental strand, 4121741 - 4121645
Alignment:
| Q |
255 |
cttgcattaagatttgtcactctattcctttctattttttatttctggaatttagttttgttgggcagtgtaggagatttctctttctgggtgtaag |
351 |
Q |
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| T |
4121741 |
cttgcattgagaattgtcattcttttcatttctattttagatttgtggattttggttttgttggctaatgtaggagatttctctttctgggggtaag |
4121645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 4131615 - 4131534
Alignment:
| Q |
233 |
tttttattggtgtgccaagatacttgcattaagatttgtcactctattcctttctattttttatttctggaatttagttttg |
314 |
Q |
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| T |
4131615 |
ttttgattggtgtgccaagattctttcattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttg |
4131534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 4337985 - 4338035
Alignment:
| Q |
199 |
aagaatgaaaagttattttgtttatcatgcatattttttattggtgtgcca |
249 |
Q |
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| T |
4337985 |
aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgcca |
4338035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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