View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_63 (Length: 374)

Name: NF11788_low_63
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_63
NF11788_low_63
[»] chr2 (30 HSPs)
chr2 (88-361)||(32614717-32614990)
chr2 (89-361)||(32633344-32633615)
chr2 (1-63)||(32614990-32615052)
chr2 (1-74)||(32615164-32615236)
chr2 (100-198)||(39621991-39622089)
chr2 (163-213)||(43259938-43259988)
chr2 (93-151)||(44606089-44606147)
chr2 (87-153)||(45314895-45314961)
chr2 (109-198)||(5060151-5060240)
chr2 (109-153)||(13220482-13220526)
chr2 (101-212)||(787373-787484)
chr2 (93-140)||(14666581-14666628)
chr2 (100-147)||(30538156-30538203)
chr2 (86-149)||(33941935-33941998)
chr2 (106-168)||(7782790-7782852)
chr2 (163-213)||(11513999-11514049)
chr2 (107-153)||(19977994-19978040)
chr2 (86-152)||(35378994-35379060)
chr2 (88-141)||(1056118-1056171)
chr2 (86-151)||(27237872-27237937)
chr2 (87-151)||(1647263-1647327)
chr2 (107-211)||(2790285-2790389)
chr2 (100-152)||(29316753-29316805)
chr2 (87-147)||(31739955-31740015)
chr2 (106-150)||(40158764-40158808)
chr2 (100-140)||(41809235-41809275)
chr2 (100-152)||(43065428-43065480)
chr2 (93-149)||(43717117-43717173)
chr2 (113-149)||(43827934-43827970)
chr2 (100-136)||(43910993-43911029)
[»] chr1 (30 HSPs)
chr1 (86-198)||(31517672-31517784)
chr1 (87-198)||(10199340-10199451)
chr1 (118-196)||(29723547-29723625)
chr1 (93-198)||(3224456-3224561)
chr1 (100-188)||(14256728-14256816)
chr1 (86-138)||(46252674-46252726)
chr1 (100-177)||(4699568-4699645)
chr1 (86-150)||(35925716-35925780)
chr1 (87-147)||(43722311-43722371)
chr1 (86-141)||(6292519-6292574)
chr1 (163-198)||(24279852-24279887)
chr1 (98-152)||(4549886-4549940)
chr1 (109-211)||(6976973-6977075)
chr1 (88-138)||(37593676-37593726)
chr1 (106-152)||(38001642-38001688)
chr1 (106-152)||(38170668-38170714)
chr1 (99-140)||(2234777-2234818)
chr1 (163-204)||(2832075-2832116)
chr1 (100-153)||(4481970-4482023)
chr1 (163-200)||(14737656-14737693)
chr1 (100-153)||(29635387-29635440)
chr1 (100-149)||(31118083-31118132)
chr1 (130-211)||(36070251-36070332)
chr1 (106-199)||(49691984-49692076)
chr1 (170-211)||(51957315-51957356)
chr1 (100-140)||(3223707-3223747)
chr1 (118-198)||(16980861-16980941)
chr1 (93-153)||(28689429-28689489)
chr1 (163-211)||(29793860-29793908)
chr1 (100-136)||(34278687-34278723)
[»] chr3 (19 HSPs)
chr3 (109-210)||(2304191-2304292)
chr3 (107-198)||(37273181-37273272)
chr3 (100-195)||(41644380-41644475)
chr3 (93-151)||(39723219-39723277)
chr3 (93-151)||(45541604-45541662)
chr3 (107-184)||(42745085-42745162)
chr3 (100-198)||(41724252-41724350)
chr3 (87-155)||(53952075-53952143)
chr3 (93-152)||(36887537-36887596)
chr3 (112-211)||(44014717-44014816)
chr3 (86-140)||(3044249-3044303)
chr3 (137-195)||(44295604-44295662)
chr3 (109-151)||(47249465-47249507)
chr3 (163-212)||(36189732-36189781)
chr3 (163-212)||(45590754-45590803)
chr3 (118-151)||(53111014-53111047)
chr3 (93-149)||(5391912-5391968)
chr3 (100-140)||(36200136-36200176)
chr3 (93-152)||(37389216-37389276)
[»] chr5 (21 HSPs)
chr5 (86-198)||(17368702-17368810)
chr5 (118-211)||(25720336-25720429)
chr5 (88-140)||(11700368-11700420)
chr5 (88-152)||(12459979-12460043)
chr5 (86-198)||(37611147-37611259)
chr5 (86-198)||(37787877-37787989)
chr5 (86-153)||(10125695-10125762)
chr5 (93-152)||(41830885-41830944)
chr5 (86-152)||(499709-499775)
chr5 (88-198)||(8089964-8090074)
chr5 (86-147)||(10272414-10272475)
chr5 (118-199)||(32172711-32172792)
chr5 (107-198)||(34205288-34205379)
chr5 (121-151)||(7856601-7856631)
chr5 (88-198)||(17258815-17258925)
chr5 (86-151)||(7674674-7674739)
chr5 (136-213)||(11104981-11105058)
chr5 (88-153)||(13604826-13604891)
chr5 (165-198)||(14599304-14599337)
chr5 (107-152)||(39248146-39248191)
chr5 (163-211)||(25705578-25705626)
[»] chr7 (28 HSPs)
chr7 (93-151)||(11048060-11048118)
chr7 (106-204)||(24909834-24909932)
chr7 (93-151)||(43219623-43219681)
chr7 (122-198)||(8094368-8094444)
chr7 (93-149)||(11047900-11047956)
chr7 (100-182)||(20553143-20553225)
chr7 (86-152)||(46082062-46082128)
chr7 (110-175)||(1914465-1914530)
chr7 (101-154)||(19719047-19719100)
chr7 (109-153)||(36537957-36538001)
chr7 (100-151)||(9038152-9038202)
chr7 (86-141)||(22551394-22551449)
chr7 (86-149)||(25670567-25670630)
chr7 (86-140)||(7244706-7244760)
chr7 (109-151)||(15740390-15740432)
chr7 (100-198)||(25796956-25797054)
chr7 (118-148)||(28702807-28702837)
chr7 (94-152)||(30535597-30535655)
chr7 (86-148)||(43250681-43250743)
chr7 (126-155)||(8960613-8960642)
chr7 (100-141)||(20888383-20888424)
chr7 (125-198)||(23214920-23214993)
chr7 (100-177)||(28844530-28844607)
chr7 (93-198)||(44808191-44808296)
chr7 (93-142)||(47134745-47134794)
chr7 (100-140)||(9423584-9423624)
chr7 (120-204)||(24895516-24895600)
chr7 (163-211)||(29363611-29363659)
[»] chr8 (19 HSPs)
chr8 (93-142)||(2594985-2595034)
chr8 (87-211)||(9700028-9700152)
chr8 (94-152)||(32840963-32841022)
chr8 (107-153)||(8629503-8629549)
chr8 (106-151)||(41442432-41442477)
chr8 (107-151)||(779040-779084)
chr8 (86-178)||(11569409-11569501)
chr8 (163-198)||(14926914-14926949)
chr8 (112-211)||(16162812-16162911)
chr8 (86-140)||(4281572-4281626)
chr8 (86-136)||(25869260-25869310)
chr8 (101-131)||(29059795-29059825)
chr8 (93-153)||(10120789-10120850)
chr8 (100-152)||(926515-926567)
chr8 (160-200)||(2213508-2213548)
chr8 (108-152)||(4390261-4390305)
chr8 (118-198)||(4763952-4764032)
chr8 (94-153)||(10114523-10114583)
chr8 (86-134)||(20672776-20672824)
[»] chr4 (15 HSPs)
chr4 (163-211)||(27671771-27671819)
chr4 (93-199)||(4691881-4691987)
chr4 (87-152)||(1137739-1137804)
chr4 (118-204)||(2996631-2996717)
chr4 (113-212)||(6428071-6428170)
chr4 (109-152)||(36577520-36577563)
chr4 (88-199)||(51560220-51560331)
chr4 (107-153)||(37863931-37863977)
chr4 (86-131)||(7694009-7694054)
chr4 (100-153)||(19395048-19395101)
chr4 (86-211)||(27123271-27123396)
chr4 (100-149)||(30631996-30632045)
chr4 (124-152)||(26884054-26884082)
chr4 (100-136)||(46201388-46201424)
chr4 (107-199)||(46247252-46247344)
[»] chr6 (20 HSPs)
chr6 (93-151)||(696635-696693)
chr6 (94-155)||(33832248-33832309)
chr6 (87-153)||(24670447-24670513)
chr6 (100-198)||(33080510-33080608)
chr6 (100-172)||(7931684-7931756)
chr6 (100-152)||(10616691-10616743)
chr6 (109-151)||(1575944-1575986)
chr6 (118-152)||(20368158-20368192)
chr6 (93-151)||(31624123-31624181)
chr6 (86-211)||(2460070-2460195)
chr6 (86-147)||(4420669-4420730)
chr6 (106-147)||(30863292-30863333)
chr6 (108-140)||(2112248-2112280)
chr6 (86-142)||(3528829-3528885)
chr6 (107-211)||(4080963-4081067)
chr6 (100-136)||(6536987-6537023)
chr6 (88-136)||(9027606-9027654)
chr6 (118-178)||(27693391-27693451)
chr6 (93-153)||(33737775-33737835)
chr6 (163-199)||(34037319-34037355)
[»] scaffold0608 (1 HSPs)
scaffold0608 (100-153)||(9614-9667)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 32614990 - 32614717
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaata 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||    
T  32614990 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacactgtatcacaagtgcttgtgctagtagata 32614891  T
Q  188 agttcaaataaactaattcaaacaatatttattctgttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcct 287  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614890 agttcaaataaactaattcaaacaacatttattttgttgataaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcct 32614791  T
Q  288 cagctaggatcttttgtagagtttgcttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatg 361  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32614790 cagttaggatcttttgtagagtttgcttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatg 32614717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 89 - 361
Target Start/End: Complemental strand, 32633615 - 32633344
Alignment:
Q  89 gagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataa 188  Q
    |||||||||  |||| | ||||||||||||||||||||||||||||| |||||  |||||| ||| | | | ||||||||||||||||||||| | ||||    
T  32633615 gagtttatggaaatagtttgaaaacaacatatgaacatgtcataagtagttttcttaagttatctcaaactatatcacaagtgcttatgctagaagataa 32633516  T
Q  189 gttcaaataaactaattcaaacaatatttattctgttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcctc 288  Q
     | |||| ||||||||   | ||   | || ||| ||||||||||||||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  32633515 at-caaagaaactaatctgagcagcctgtaatctattgagaaatgttccatgaaatatgactcaccgatttatggcatctacatcaggagttccatcctc 32633417  T
Q  289 agctaggatcttttgtagagtttgcttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatg 361  Q
    || ||||||| |||||||||||||||||||||||||||  || ||||||||||| || |||||||| ||||||    
T  32633416 agttaggatcgtttgtagagtttgcttttcaacacgttcaaagattcttaaaatcaattcatcatgttttatg 32633344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32615052 - 32614990
Alignment:
Q  1 gttgaaaatggccattagtgtcatttgattaataacaattcctccttaaagaagtgataacta 63  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32615052 gttgaaaacggccattagtgtcatttgattaataacaatttctccttaaagaagtgataacta 32614990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32615236 - 32615164
Alignment:
Q  1 gttgaaaatggccattagtgtcatttgattaataacaattcctccttaaagaagtgataactattgtcataaac 74  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||||    
T  32615236 gttgaaaatggccattagtgtcatttaattaataataattcctccttaaag-agggataactattgtcataaac 32615164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 39621991 - 39622089
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||| ||||||||||  ||||||  |||||||||||||||| ||||||||||| | |  || || ||||||||||| | |||| ||||||||||||||    
T  39621991 aataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttatacaagtagataagttcaaataa 39622089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 43259938 - 43259988
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaat 213  Q
    ||||||||||||||||||||| |||||||||||||| | ||| ||||||||    
T  43259938 tcacaagtgcttatgctagtagataagttcaaataagccaatccaaacaat 43259988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 44606147 - 44606089
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||| ||| | ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  44606147 ttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttct 44606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 45314895 - 45314961
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||| ||||||| ||||| ||||||||||| ||| || ||||||||||||||||  |||||||||||    
T  45314895 gagattttatgaaaataaactgaaaacaacttataaatatgtcataagttgtttacataagttctct 45314961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 5060240 - 5060151
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||||| | |||||||||||||||||| | ||| | |||||| |  |  | |||||||| |||||||||||||||||| |||||||||||    
T  5060240 aaaacagcctatgaacatgtcataagtagctttgacaagttcacgcaattagtatcacaggtgcttatgctagtaaatgagttcaaataa 5060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 13220482 - 13220526
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||| | |||||||| |||||||||||||||||||||||||||    
T  13220482 aaaacagcttatgaacaagtcataagttgtttttataagttctct 13220526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 787373 - 787484
Alignment:
Q  101 ataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaac 200  Q
    |||| ||||||||| | |||| |||||||||||| |||||| ||||||||||  | |  || |||||||||||||||| |||| ||| | || ||||| |    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatc 787472  T
Q  201 taattcaaacaa 212  Q
     ||| |||||||    
T  787473 caatccaaacaa 787484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 14666581 - 14666628
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    |||||| |||||  |||||||||| |||||||||||||||||||||||    
T  14666581 ttatgaaaataaggtgaaaacaacctatgaacatgtcataagttgttt 14666628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 30538203 - 30538156
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||||||    
T  30538203 aataagctgaaaacaacttatggacatgtcataagttgtttctataag 30538156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 33941935 - 33941998
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    ||||||||||||| |||||  ||||| || | ||||||| |||||||||||||||| |||||||    
T  33941935 ggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataagtt 33941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 7782790 - 7782852
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaa 168  Q
    ||||| ||||| |||||| |||| ||||||||||||||||| |||||||| |  |||||||||    
T  7782790 ctgaacacaacttatgaaaatgttataagttgtttttataaattctcttaaacagtatcacaa 7782852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 11513999 - 11514049
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaat 213  Q
    ||||||||||||||||||||| ||||  |||||||||| ||| ||||||||    
T  11513999 tcacaagtgcttatgctagtagataatctcaaataaaccaatccaaacaat 11514049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 19977994 - 19978040
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||||||| ||||||| ||| ||||||||||| ||||||||||||    
T  19977994 tgaaaacaacttatgaacgtgttataagttgtttctataagttctct 19978040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 35379060 - 35378994
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||| |||||| ||||| ||||||||||| |||||||| ||||| || |||||| ||||| ||||    
T  35379060 ggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctc 35378994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 1056171 - 1056118
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttt 141  Q
    |||| |||||| || || |||||||||||  |||||||||||||||||||||||    
T  1056171 agagcttatgaaaacaagctgaaaacaactaatgaacatgtcataagttgtttt 1056118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 27237937 - 27237872
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    ||||||||||||  ||||| || |||||| | |||| |||||||||||| ||||| ||||||||||    
T  27237937 ggagagtttatggaaataagctaaaaacagcttatgtacatgtcataagctgtttctataagttct 27237872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 1647263 - 1647327
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    ||||| |||||  ||||| ||||||||| | ||||| ||||||||||| |||||| |||||||||    
T  1647263 gagagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttct 1647327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 2790285 - 2790389
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattc 206  Q
    |||||||||| |||| |||||||||  ||||||| | |||| ||||||  |  || | |||||| ||||| |||||| |||||||||||||| | ||| |    
T  2790285 tgaaaacaacttatggacatgtcatttgttgtttctgtaagatctcttgaagagtctgacaagtacttatactagtagataagttcaaataagccaatcc 2790384  T
Q  207 aaaca 211  Q
    |||||    
T  2790385 aaaca 2790389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 29316805 - 29316753
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||| | |||||||    
T  29316805 aataagctgaaaagaacttatgaacatgtcataagctgtttttgttagttctc 29316753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 31740015 - 31739955
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    ||||| |||||  ||||||||||||||| | ||||| |||||||| |||||||| ||||||    
T  31740015 gagagcttatggaaataatctgaaaacagcttatgatcatgtcatgagttgtttctataag 31739955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 40158764 - 40158808
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttc 150  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  40158764 ctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 41809275 - 41809235
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| || |||||||| |||||||||||||||||||||||    
T  41809275 aataagctaaaaacaacttatgaacatgtcataagttgttt 41809235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 43065480 - 43065428
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| ||||||||||  |||| ||||||||||||||||||| ||||| ||||    
T  43065480 aataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 43717173 - 43717117
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    |||||| ||||| ||||||||||| |||||| ||||| |||| |||||| |||||||    
T  43717173 ttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttcataagtt 43717117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 43827970 - 43827934
Alignment:
Q  113 caacatatgaacatgtcataagttgtttttataagtt 149  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  43827970 caacttatgaacatgtcataagctgtttttataagtt 43827934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 43911029 - 43910993
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  43911029 aataagctgaaaacaacttatgaacatgtcataagtt 43910993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 31517784 - 31517672
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||| ||||| ||||||||| | |||||||||||||| ||||||||| ||||||||||  | |  || |||||||||||||||| ||||||    
T  31517784 ggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaa 31517685  T
Q  186 taagttcaaataa 198  Q
    |||| ||||||||    
T  31517684 taagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 10199451 - 10199340
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaat 186  Q
    ||||| |||||| ||||| ||||||||||| ||||||||||||||||| | |||| || |||||||  | || || ||||||||||||||| ||||| ||    
T  10199451 gagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagat 10199352  T
Q  187 aagttcaaataa 198  Q
    ||| ||||||||    
T  10199351 aagctcaaataa 10199340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 29723547 - 29723625
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaat 196  Q
    |||| |||||||||||| |||||  || |||||| | | | ||||||||||||||||||||||||||||||| ||||||    
T  29723547 tatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagtgcttatgctagtaaataagctcaaat 29723625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 3224456 - 3224561
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttc 192  Q
    |||||| ||||| |||| |||||| |||| ||||||||||||| |||| ||||| |||||| | || || |||||||||||||||   ||||||||  ||    
T  3224456 ttatgaaaataagctgagaacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcacaagtgcttatgtcggtaaataaactc 3224555  T
Q  193 aaataa 198  Q
    ||||||    
T  3224556 aaataa 3224561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 14256816 - 14256728
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataa 188  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||||||| |  || || ||  ||||||| |||||||||||| ||||    
T  14256816 aataagctgaaaacaacttatgaccatgtcctaagttgtttttataagtttttctaaatagtgccacaagttcttatgctagtagataa 14256728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 46252726 - 46252674
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgt 138  Q
    |||||| |||||| ||||| ||||||||||| |||||||||||||||||||||    
T  46252726 ggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagttgt 46252674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 4699645 - 4699568
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatg 177  Q
    ||||| || |||||| | |||||||||||||||||||||||| ||||||  | | | ||||||||||||| |||||||    
T  4699645 aataagctaaaaacagcttatgaacatgtcataagttgttttcataagtattatcaaattgtatcacaagcgcttatg 4699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 35925716 - 35925780
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttc 150  Q
    ||||||||||||  |||||  |||||||| | ||||||||||||||||| |||||| ||||||||    
T  35925716 ggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 43722371 - 43722311
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    ||||| |||| | ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  43722371 gagagcttataaaaataagctgaaaacaacataagaacatgtcataagtttttttcataag 43722311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 6292519 - 6292574
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttt 141  Q
    |||||| |||||| ||||| ||||||||| | ||||||||||||||||| ||||||    
T  6292519 ggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt 6292574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 24279852 - 24279887
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24279852 tcacaagtgtttatgctagtaaataagttcaaataa 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 4549886 - 4549940
Alignment:
Q  98 agaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||||| ||||||||||| ||||||||||||||||  |||||| | ||||||||    
T  4549886 agaataagctgaaaacaacttatgaacatgtcataatctgttttcagaagttctc 4549940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 6976973 - 6977075
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaa 208  Q
    |||||| | |||||||||||||||||||||||  || || ||||  | |  |  |||||||| || |||||| |||||||| |||||||| |||||||||    
T  6976973 aaaacagcttatgaacatgtcataagttgtttccattagctctcgcaaacagcctcacaagttctcatgctaataaataagctcaaataatctaattcaa 6977072  T
Q  209 aca 211  Q
    |||    
T  6977073 aca 6977075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 37593726 - 37593676
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgt 138  Q
    |||| |||||| ||||| ||||||||| | |||||||||||||||||||||    
T  37593726 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataagttgt 37593676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 38001642 - 38001688
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||||||||| |||||||| |||||||| |||||| ||||||||||    
T  38001642 ctgaaaacaacttatgaacaggtcataagctgttttcataagttctc 38001688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 38170714 - 38170668
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||||||||| ||||||||||||||||| |||||| ||||| ||||    
T  38170714 ctgaaaacaacttatgaacatgtcataagctgttttcataagctctc 38170668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 2234777 - 2234818
Alignment:
Q  99 gaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| ||| |||||||| |||||||||||||||||||||||    
T  2234777 gaatagtctaaaaacaacttatgaacatgtcataagttgttt 2234818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 2832075 - 2832116
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaat 204  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  2832075 tcacaagtgcttatgctagtagataagctcaaataagctaat 2832116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 4481970 - 4482023
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    ||||| || |||||| | ||||||||||| |||||||||||| |||||||||||    
T  4481970 aataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctct 4482023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 14737693 - 14737656
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaac 200  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  14737693 tcacaagtgcttattctagtaaataagctcaaataaac 14737656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 29635387 - 29635440
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    ||||| ||||||||||| ||| |||||||||||| ||||||| |||| ||||||    
T  29635387 aataagctgaaaacaacttataaacatgtcataacttgttttcataaattctct 29635440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 31118083 - 31118132
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    ||||| |||||||||||  |||||||||||||||| |||||| |||||||    
T  31118083 aataagctgaaaacaactgatgaacatgtcataagatgttttcataagtt 31118132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 36070251 - 36070332
Alignment:
Q  130 ataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    |||||||||||| |||||||||| || |  || |||||||||||||||| || | ||||  |||||||||| ||| ||||||    
T  36070251 ataagttgttttcataagttctcctaaacagtctcacaagtgcttatgccagaagataatatcaaataaaccaatccaaaca 36070332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 49692076 - 49691984
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaa 199  Q
    ||||||||||  |||| |||||||||||| | |||| ||||||||||| | |  || |||||||| ||||||| | || |||||||||||||||    
T  49692076 ctgaaaacaaactatggacatgtcataagctattttcataagttctctcaaacagtctcacaagttcttatgc-attagataagttcaaataaa 49691984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 51957356 - 51957315
Alignment:
Q  170 tgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    |||||||||||||| |||||||||||||| ||||| ||||||    
T  51957356 tgcttatgctagtagataagttcaaataagctaatacaaaca 51957315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 3223707 - 3223747
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| ||||||||||| ||| |||||||||||||||||||    
T  3223707 aataagctgaaaacaacttataaacatgtcataagttgttt 3223747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 16980861 - 16980941
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||||| ||||| ||||||||||  ||||| ||||| | || || |||||||| |||||| | ||| ||||||||||||||    
T  16980861 tatgaaaatgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgttggtatataagttcaaataa 16980941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 28689489 - 28689429
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||| ||||| ||||||||||| |||| |||||||||||| |||||   ||||||||||    
T  28689489 ttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctct 28689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 29793860 - 29793908
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||||||||||||||| |||||||| |||||||||   ||||||||||    
T  29793860 tcacaagtgcttatgctggtaaataaattcaaataagtcaattcaaaca 29793908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 34278723 - 34278687
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  34278723 aataagctgaaaacaacctatgaacatgtcataagtt 34278687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 2304292 - 2304191
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaa 208  Q
    |||||| | |||||||||||||||||||| ||| |||| |||||| | || || ||||||||| ||||||||||| || ||||||||||| | |||||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagatcagttcaaataagccaattcaa 2304193  T
Q  209 ac 210  Q
    ||    
T  2304192 ac 2304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 37273181 - 37273272
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||||||||| |||| ||||||||||||||||||  ||||| ||||  | |  || |||| ||||||||||||| |||||||||||||||||    
T  37273181 tgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataa 37273272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 41644475 - 41644380
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaa 195  Q
    ||||| ||||||||| | |||||| |||||  ||||||||||||||||||||| || |  || || |||||||||||||||||| ||||| |||||    
T  41644475 aataagctgaaaacagcttatgaaaatgtcccaagttgtttttataagttctcctaaacagtgtctcaagtgcttatgctagtagataagctcaaa 41644380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 39723277 - 39723219
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||| ||||||||| | ||||||||||||||||| |||||| |||||||||    
T  39723277 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 39723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 45541604 - 45541662
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||| ||||||||| | ||||||||||||||||| |||||| |||||||||    
T  45541604 ttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttct 45541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 42745085 - 42745162
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaa 184  Q
    |||||||||| |||||||||||||||||||||||  |||| ||||  || ||  ||||||||||||||||| ||||||    
T  42745085 tgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaagtgcttatgatagtaa 42745162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 41724252 - 41724350
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||| ||||||||||| |||| ||||||||||||||||||  ||||||| ||  | | ||| | |||||| ||||||  |||| ||||||||||||||    
T  41724252 aataagctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaagtacttatgtcagtagataagttcaaataa 41724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 53952075 - 53952143
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctctta 155  Q
    |||||||||||| ||||| ||||||||| |  |||||||||| || || |||||| |||||||||||||    
T  53952075 gagagtttatgaaaataagctgaaaacagctcatgaacatgttatcagctgttttcataagttctctta 53952143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 36887537 - 36887596
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||| ||||| ||||||||| | ||||||||||||| ||||| |||| ||||||||||    
T  36887537 ttatgaaaataagctgaaaacatcttatgaacatgtcaaaagttcttttgataagttctc 36887596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 44014816 - 44014717
Alignment:
Q  112 acaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||| |||||||| |||||||| |||||| ||||||| ||| | |  || ||||||||| ||||||||||| ||||  |||||||| | ||| ||||||    
T  44014816 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaaca 44014717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 3044303 - 3044249
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    |||||| |||||| |||||  |||||||| | |||||||||||||||||||||||    
T  3044303 ggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 44295604 - 44295662
Alignment:
Q  137 gtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaa 195  Q
    ||||| ||||||||||| | || |||||||||||||||||||| ||| ||||| |||||    
T  44295604 gttttcataagttctctcaaatagtatcacaagtgcttatgcttgtagataagctcaaa 44295662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 47249507 - 47249465
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  47249507 aaaacaacttatgaacatgtcataagtggttttcataagttct 47249465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 36189732 - 36189781
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaa 212  Q
    |||||||||||||| |||||||||||| ||||||||   |||||||||||    
T  36189732 tcacaagtgcttatactagtaaataagctcaaataagtcaattcaaacaa 36189781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 45590754 - 45590803
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaa 212  Q
    ||||||||||||||||||||| ||||||||||| ||   |||||||||||    
T  45590754 tcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaa 45590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 53111047 - 53111014
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttct 151  Q
    ||||||| ||||||||||||||||||||||||||    
T  53111047 tatgaacgtgtcataagttgtttttataagttct 53111014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 5391912 - 5391968
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    |||||| |||||  |||||||| | ||||||||||||||||| |||||| |||||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 36200136 - 36200176
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  36200136 aataagctgaaaacaacttatggacatgtcataagttgttt 36200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 37389216 - 37389276
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaaca-tgtcataagttgtttttataagttctc 152  Q
    |||||||||||| || ||| || ||| |||||| |||||||||||||||| ||||||||||    
T  37389216 ttatgagaataagctaaaagcagcatttgaacaatgtcataagttgttttcataagttctc 37389276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 17368702 - 17368810
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||  ||||| ||||||||  |||||||||||||||||||||||||| |||||||||||      || |||||||||||||||| |||| |    
T  17368702 ggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttctct----cggtgtcacaagtgcttatgccagtaga 17368797  T
Q  186 taagttcaaataa 198  Q
    |||||| ||||||    
T  17368798 taagtttaaataa 17368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 25720429 - 25720336
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    |||||||||||||| | ||||||||||||| ||||| | |  || |||||||||||||||| |||| ||||  |||||||| ||||||||||||    
T  25720429 tatgaacatgtcatgaattgtttttataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaaca 25720336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 11700420 - 11700368
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||||||||| ||||||||||||||| | |||| ||||||||||||||||||    
T  11700420 agagtttatgaaaataatctgaaaacagcttatggacatgtcataagttgttt 11700368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 12460043 - 12459979
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||| |||||| ||||| |  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  12460043 agagcttatgaaaataagccaaaaacaacatatgaacatgtcataagttgttttcataggttctc 12459979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 37611259 - 37611147
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||  ||||| ||||||||| | ||||||||||||| |||||||||| ||||| ||||| | |   | |||||||| ||| ||| |||| |    
T  37611259 ggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtaga 37611160  T
Q  186 taagttcaaataa 198  Q
    |||||||||||||    
T  37611159 taagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 37787989 - 37787877
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||  ||||| ||||||||| | ||||||||||||| |||||||||| ||||| ||||| | |   | |||||||| ||| ||| |||| |    
T  37787989 ggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtaga 37787890  T
Q  186 taagttcaaataa 198  Q
    |||||||||||||    
T  37787889 taagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 10125762 - 10125695
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||| |||||| ||||| ||||||||| | ||| |||||||||||||||||||  |||||||||||    
T  10125762 ggagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctct 10125695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 41830885 - 41830944
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||| ||||| | |||||||||||||||||| ||||||||||||||||  ||||||||    
T  41830885 ttatgaaaataaacggaaaacaacatatgaacacgtcataagttgtttttgcaagttctc 41830944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 499775 - 499709
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||||||||||  ||||| ||||||||||| | | ||||||||||||| |||||| ||||||||||    
T  499775 ggagagtttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctc 499709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 8089964 - 8090074
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaata 187  Q
    |||| |||||| ||||| ||||||||| | || ||| || |||||||||||||| ||||| ||||| | || || || | ||||||| || ||||| |||    
T  8089964 agagcttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtctcgcgagtgcttgtgttagtagata 8090063  T
Q  188 agttcaaataa 198  Q
    |||||||||||    
T  8090064 agttcaaataa 8090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 10272475 - 10272414
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    ||||||||||||| ||||| ||||||||||| ||   |||||||||||||||||| ||||||    
T  10272475 ggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataag 10272414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 32172711 - 32172792
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaa 199  Q
    |||| ||||||||||||||||||  ||||| ||||  | | | | ||||||||||||||||||||| ||||| |||||||||    
T  32172711 tatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataaa 32172792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 34205288 - 34205379
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||||||||| |||||||||| ||||||||||||  ||||| ||||  | || ||  || || ||||||||  |||||||||||||||||||    
T  34205288 tgaaaacaacttatgaacatgacataagttgtttccataagctctccaaaatagttccataaatgcttatgtcagtaaataagttcaaataa 34205379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 7856601 - 7856631
Alignment:
Q  121 gaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||||||||||||||||||||||    
T  7856601 gaacatgtcataagttgtttttataagttct 7856631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 17258925 - 17258815
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaata 187  Q
    |||| |||||| ||||| ||||||||| | ||||||||||||||||| | |||| ||| ||||||  | |   | ||||||||||||||| ||||  |||    
T  17258925 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcacaagtgcttatgttagttgata 17258826  T
Q  188 agttcaaataa 198  Q
    || ||||||||    
T  17258825 agctcaaataa 17258815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 7674674 - 7674739
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    ||||| ||| ||| ||||| ||||||||| | ||| |||||||||||||||||||  |||||||||    
T  7674674 ggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttct 7674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 11104981 - 11105058
Alignment:
Q  136 tgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaat 213  Q
    |||||| ||||||||||  | || |||||||||||||||||||| ||  ||||| |||||||||  ||| ||||||||    
T  11104981 tgttttcataagttctcccaaatagtatcacaagtgcttatgctggttgataagctcaaataaatcaatccaaacaat 11105058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 13604891 - 13604826
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||| |||||| |||||  |||||||||| |||| |||||||||||| |||||| ||||| |||||    
T  13604891 agagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctct 13604826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 14599337 - 14599304
Alignment:
Q  165 acaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||||| ||||||||||||||||||||||||||    
T  14599337 acaagtgtttatgctagtaaataagttcaaataa 14599304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 39248146 - 39248191
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||||| | |||||||| |||||||| |||||||||||||||||    
T  39248146 tgaaaacagcttatgaacaagtcataagctgtttttataagttctc 39248191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 25705626 - 25705578
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||||||||||||| ||||| ||||||||||||||  |||| ||||||    
T  25705626 tcacaagtgcttatgttagtagataagttcaaataatttaatccaaaca 25705578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 11048060 - 11048118
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||    
T  11048060 ttatgagaataagctgaaaacagcttatgaacatgtcataagttgttttgataagttct 11048118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 24909834 - 24909932
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaat 204  Q
    ||||||||| | |||||||||||||| ||||| ||| ||||||||||| |  | || ||| |||||||||||  | || ||||||||||||||||||||    
T  24909834 ctgaaaacagcttatgaacatgtcattagttgatttcataagttctctcaagtggtctcataagtgcttatgtcaatatataagttcaaataaactaat 24909932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 43219681 - 43219623
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||| ||||||||| | ||||||||||||||||| |||||| |||||||||    
T  43219681 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 43219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 8094368 - 8094444
Alignment:
Q  122 aacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||||||||||| |||||| ||||  ||||| | || || ||||||||||||||||||||| ||||| ||||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataa 8094444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 11047900 - 11047956
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    ||||||| |||| || |||||| | ||||||||||||||||||||||||||||||||    
T  11047900 ttatgaggataagctaaaaacagcttatgaacatgtcataagttgtttttataagtt 11047956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 20553143 - 20553225
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagt 182  Q
    ||||||||||||||||| |||||||||||| |||| |||||  ||||| |||| |  |  || ||||||||||||||||||||    
T  20553143 aataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttatgctagt 20553225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 46082062 - 46082128
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||| |||||| ||||| ||||||||||| ||||  |||||||||||||||||| ||||| ||||    
T  46082062 ggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 1914465 - 1914530
Alignment:
Q  110 aaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgctta 175  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| | || || |||||| ||||||    
T  1914465 aaacaacttatgaacatgtcataagctgtttttataagtgctctgaaatagtctcacaattgctta 1914530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 19719047 - 19719100
Alignment:
Q  101 ataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctctt 154  Q
    |||| |||||||||   |||||||||||||||||||||||| ||||||||||||    
T  19719047 ataagctgaaaacagtttatgaacatgtcataagttgttttcataagttctctt 19719100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 36537957 - 36538001
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||||| |||||||||||||||||||||||  |||||||||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctct 36538001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 9038152 - 9038202
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||||||||||    
T  9038152 aataagctgaaaacaat-tatgaacatgtcataagctgtttttataagttct 9038202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 22551449 - 22551394
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttt 141  Q
    |||||| |||||  ||||| ||||||||||||| ||||||||||||||| ||||||    
T  22551449 ggagagcttatgtaaataagctgaaaacaacatttgaacatgtcataagctgtttt 22551394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 25670630 - 25670567
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    |||||| || ||| ||||| ||||||||||  ||| |||||||||||||||||||| |||||||    
T  25670630 ggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagtt 25670567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 7244706 - 7244760
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    |||||| |||||| ||||| ||||||||||| ||||| |||||||||| ||||||    
T  7244706 ggagagcttatgaaaataagctgaaaacaacttatgagcatgtcataaattgttt 7244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 15740432 - 15740390
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||| | |||||||||||||||||||||||| |||||||||    
T  15740432 aaaacagcttatgaacatgtcataagttgttttcataagttct 15740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 25797054 - 25796956
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||| ||||||||||| | |  |||||||||||| | ||||| |  ||||||| ||| ||| ||| |||| ||||||| || ||||||||||||||||    
T  25797054 aataagctgaaaacaacttgtagacatgtcataagctatttttgttggttctctgacactgtctcataagtacttatgccagaaaataagttcaaataa 25796956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 148
Target Start/End: Original strand, 28702807 - 28702837
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagt 148  Q
    |||||||||||||||||||||||||||||||    
T  28702807 tatgaacatgtcataagttgtttttataagt 28702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 30535597 - 30535655
Alignment:
Q  94 tatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| ||||| ||||||||| | || |||||| |||||||||||||| ||||||||||    
T  30535597 tatgaaaataacctgaaaacagcttacgaacatatcataagttgttttcataagttctc 30535655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 43250743 - 43250681
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagt 148  Q
    |||||| ||||||  |||| ||||||||||| || |||||||||||||| |||||| ||||||    
T  43250743 ggagagcttatgaatataaactgaaaacaacttacgaacatgtcataagctgttttcataagt 43250681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 8960642 - 8960613
Alignment:
Q  126 tgtcataagttgtttttataagttctctta 155  Q
    ||||||||||||||||||||||||||||||    
T  8960642 tgtcataagttgtttttataagttctctta 8960613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 20888424 - 20888383
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttt 141  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  20888424 aataagctgaaaacaacttatgaacatggcataagttgtttt 20888383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 23214920 - 23214993
Alignment:
Q  125 atgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||||||||||||||| |||| |||||| | |  || ||| ||||| ||||||||||| ||||| ||||||||    
T  23214920 atgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataa 23214993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 28844530 - 28844607
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatg 177  Q
    ||||| |||||||||||  ||| ||||||||||||||||||| | ||| |||| || |  |||||||| |||||||||    
T  28844530 aataaactgaaaacaactgatggacatgtcataagttgttttcagaagctctcctaaacagtatcacatgtgcttatg 28844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 44808191 - 44808296
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttc 192  Q
    |||||| ||||| |||||||||   |||| |||||||||||||| |||| ||||| ||| | | |  || | |||| ||||||||||| |||||||| ||    
T  44808191 ttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtctgacaactgcttatgctaataaataagctc 44808290  T
Q  193 aaataa 198  Q
    ||||||    
T  44808291 aaataa 44808296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 47134794 - 47134745
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgttttt 142  Q
    |||||| ||||| ||||||||||| |||| || |||||||||||||||||    
T  47134794 ttatgaaaataagctgaaaacaacttatggacgtgtcataagttgttttt 47134745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 9423624 - 9423584
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| ||||||||||| |||||||||||||||| ||||||    
T  9423624 aataagctgaaaacaacttatgaacatgtcataaattgttt 9423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 24895516 - 24895600
Alignment:
Q  120 tgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaat 204  Q
    |||||||||||| ||||| ||| ||||||||||| |  | || ||| |||||||||||  | || ||||||| ||||||||||||    
T  24895516 tgaacatgtcattagttgatttcataagttctctcaagtggtctcataagtgcttatgtcaatatataagttaaaataaactaat 24895600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 29363611 - 29363659
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||||||||||||| ||||| |||||||||||||| | ||| ||||||    
T  29363611 tcacaagtgcttatgttagtagataagttcaaataagccaatccaaaca 29363659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 2595034 - 2594985
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgttttt 142  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2595034 ttatgagaataagctgaaaacaacttatgaacatgtcataagttgttttt 2594985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 9700028 - 9700152
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaat 186  Q
    ||||| |||||| |||||  |||||||| | |||| ||||||||||| ||| ||| | ||| ||||| | || || ||||||||| ||||||||||| ||    
T  9700028 gagagcttatgaaaataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagat 9700127  T
Q  187 aagttcaaataaactaattcaaaca 211  Q
    ||| ||||||||  |||| ||||||    
T  9700128 aagctcaaataagttaatccaaaca 9700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 32841022 - 32840963
Alignment:
Q  94 tatgagaataatctgaaaacaacatatgaaca-tgtcataagttgtttttataagttctc 152  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  32841022 tatgaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctc 32840963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 8629503 - 8629549
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  8629503 tgaaaacaacttatgatcatgtcataagttgttttcataagttctct 8629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 41442477 - 41442432
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  41442477 ctgaaaacagcatatgaacatgtcataaattgttttcataagttct 41442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 779084 - 779040
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||    
T  779084 tgaaaacaacttatgaacatgtcataagttgttttcgtaagttct 779040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 11569501 - 11569409
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgc 178  Q
    |||||| || ||| ||||| ||||||||||| |||| |||||||||||| |||||  ||||| ||||||| |  || ||||||||| ||||||    
T  11569501 ggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgc 11569409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 14926949 - 14926914
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||||||||||||||| |||||||||||||||||||    
T  14926949 tcacaagtgcttatgccagtaaataagttcaaataa 14926914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 16162812 - 16162911
Alignment:
Q  112 acaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||| |||||||| |||||||| |||||| ||||||| ||| | |  || ||||||||| ||||||||||| ||||  |||||||| | ||| ||||||    
T  16162812 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaaca 16162911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 4281572 - 4281626
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||| ||||||| |||||  |||||||||| ||||||||||||||| |||||||    
T  4281572 ggagaatttatgaaaataagatgaaaacaacttatgaacatgtcatatgttgttt 4281626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 25869310 - 25869260
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    ||||||||||||  ||||| ||||||||||| |||| ||||||||||||||    
T  25869310 ggagagtttatggaaataagctgaaaacaacttatggacatgtcataagtt 25869260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 29059825 - 29059795
Alignment:
Q  101 ataatctgaaaacaacatatgaacatgtcat 131  Q
    |||||||||||||||||||||||||||||||    
T  29059825 ataatctgaaaacaacatatgaacatgtcat 29059795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 10120789 - 10120850
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatga-acatgtcataagttgtttttataagttctct 153  Q
    |||||| ||||| ||||||||| ||||||| | |||||||||| |||||| |||||||||||    
T  10120789 ttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataagttctct 10120850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 926515 - 926567
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| ||||||||  | |||||||||||||||||||||||| |||| |||||    
T  926515 aataagctgaaaacggcttatgaacatgtcataagttgttttgataaattctc 926567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 2213508 - 2213548
Alignment:
Q  160 gtatcacaagtgcttatgctagtaaataagttcaaataaac 200  Q
    |||||||||||| ||||||||||| |||| |||||||||||    
T  2213508 gtatcacaagtgtttatgctagtagataatttcaaataaac 2213548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 4390261 - 4390305
Alignment:
Q  108 gaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||    
T  4390261 gaaaacaacttatgaacatgccataagttgttttcataaattctc 4390305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 4763952 - 4764032
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    |||| ||||||||| || |||||| | ||| ||||||| || || ||| | ||||||||||||||  ||||||||||||||    
T  4763952 tatggacatgtcattagatgttttcaaaagctctcttaaatagtctcataggtgcttatgctagtggataagttcaaataa 4764032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 10114523 - 10114583
Alignment:
Q  94 tatgagaataatctgaaaacaacatatga-acatgtcataagttgtttttataagttctct 153  Q
    ||||| ||||| ||||||||| ||||||| | |||| |||||||||||| |||||||||||    
T  10114523 tatgaaaataagctgaaaacagcatatgataaatgttataagttgttttcataagttctct 10114583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 20672776 - 20672824
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataag 134  Q
    |||||| |||||| ||||| ||||||||| | |||||||||||||||||    
T  20672776 ggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 27671819 - 27671771
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaactaattcaaaca 211  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  27671819 tcacaagtgcttatgctagcaaataagttcaaataaaccaattcaaaca 27671771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 4691881 - 4691987
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttc 192  Q
    |||||| ||||| ||||||||||||||||  |||||||||||||||||  ||||||| ||| | || || ||||||||| || ||  |||| ||||| ||    
T  4691881 ttatgaaaataagctgaaaacaacatatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaagtgattgtgacagtagataagctc 4691980  T
Q  193 aaataaa 199  Q
    |||||||    
T  4691981 aaataaa 4691987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 1137739 - 1137804
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| |||||  ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  1137739 gagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctc 1137804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 2996631 - 2996717
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaat 204  Q
    |||| ||||||||||||||||||| ||||| ||||| | |  || ||| |||||||||||  | ||||||||||||||||| |||||    
T  2996631 tatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaat 2996717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 6428071 - 6428170
Alignment:
Q  113 caacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattcaaacaa 212  Q
    |||| |||| ||||||||||||||||||| ||||  ||||| | | ||| |||||||||||||| | | || ||||| ||||||||   |||||||||||    
T  6428071 caacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaacaa 6428170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 36577563 - 36577520
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||    
T  36577563 aaaacagcatttgaacatgtcataagttgtttttgtaagttctc 36577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 51560331 - 51560220
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaata 187  Q
    |||| |||||||||||| || |||||||  ||||||||||| ||||| |||||| ||||| ||||  | |  || ||| |||||||||||| |||| |||    
T  51560331 agagattatgagaataagctaaaaacaagttatgaacatgtgataaggtgttttcataaggtctcccaaagagtctcataagtgcttatgccagtagata 51560232  T
Q  188 agttcaaataaa 199  Q
    || ||| |||||    
T  51560231 agctcatataaa 51560220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 37863977 - 37863931
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||||||| ||||||| ||||||||| |||||| |||||||||||    
T  37863977 tgaaaacaacttatgaacgtgtcataagctgttttcataagttctct 37863931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 7694054 - 7694009
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcat 131  Q
    ||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  7694054 ggagagtttatggaaataagctgaaaacaacttatgaacatgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 19395101 - 19395048
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    ||||| ||||||| | | ||| |||||||| |||||||||||||||||||||||    
T  19395101 aataagctgaaaatagcttataaacatgtcgtaagttgtttttataagttctct 19395048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 27123396 - 27123271
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||  |||||  |||||||||| ||   ||||||||||||||||||  ||||| ||||| | |  || |||||||| |||||||||||  |    
T  27123396 ggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagttta 27123297  T
Q  186 taagttcaaataaactaattcaaaca 211  Q
    |||| ||||||||  |||| ||||||    
T  27123296 taagctcaaataagttaatccaaaca 27123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 30631996 - 30632045
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagtt 149  Q
    ||||| || |||||| | |||||||||| |||||||||||||||||||||    
T  30631996 aataagcttaaaacagcttatgaacatgccataagttgtttttataagtt 30632045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 26884054 - 26884082
Alignment:
Q  124 catgtcataagttgtttttataagttctc 152  Q
    |||||||||||||||||||||||||||||    
T  26884054 catgtcataagttgtttttataagttctc 26884082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 46201388 - 46201424
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  46201388 aataagctgaaaacaacctatgaacatgtcataagtt 46201424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 46247252 - 46247344
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaa 199  Q
    |||| ||||| ||| ||||||||||||||| |||| ||||| ||||| | |   | ||||||||| ||||||| ||| |||||||||| ||||    
T  46247252 tgaagacaacttatcaacatgtcataagttcttttcataagatctctcagacaatctcacaagtgtttatgctggtagataagttcaattaaa 46247344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 696635 - 696693
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||||||||| ||||||||| | ||||||||||||||||| |||||| |||||||||    
T  696635 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 696693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 33832309 - 33832248
Alignment:
Q  94 tatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctctta 155  Q
    ||||| ||||| || |||||||| ||| |||||||||||||||||||| |||||||||||||    
T  33832309 tatgaaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctctta 33832248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 24670447 - 24670513
Alignment:
Q  87 gagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    ||||| |||||| ||||| |||| |||| |||||  |||||||||||||||||| ||||||||||||    
T  24670447 gagagcttatgaaaataagctgataacagcatattgacatgtcataagttgtttctataagttctct 24670513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 33080608 - 33080510
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataa 198  Q
    ||||| ||||||| ||| ||| |||||||||||||||| ||| | || |||| ||| |   | |||||||||||||||| |||||||||| ||||||||    
T  33080608 aataaactgaaaataacttataaacatgtcataagttggtttcagaaattctattaaacaatctcacaagtgcttatgccagtaaataagctcaaataa 33080510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 7931756 - 7931684
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgc 172  Q
    ||||| ||||||||||| || ||||||||||||||||||||| ||||| |||  || || || ||||||||||    
T  7931756 aataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaagtgc 7931684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 10616743 - 10616691
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctc 152  Q
    ||||| ||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  10616743 aataaactgaaaacagcttatgaacatgtcataaggtgttttgataagttctc 10616691  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 1575944 - 1575986
Alignment:
Q  109 aaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||| | |||||||||||||||||||||||| |||||||||    
T  1575944 aaaacagcttatgaacatgtcataagttgttttcataagttct 1575986  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 20368192 - 20368158
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctc 152  Q
    |||||||||||||||||||||||| ||||||||||    
T  20368192 tatgaacatgtcataagttgttttcataagttctc 20368158  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 31624123 - 31624181
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttct 151  Q
    |||||| |||||  |||||||| | ||||||||||||||||| |||||| |||||||||    
T  31624123 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 2460195 - 2460070
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaa 185  Q
    |||||| |||||  |||||  |||||||||| ||   ||||||||||||||||||  ||||| ||||| | |  || |||||||| |||||||||||  |    
T  2460195 ggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagttta 2460096  T
Q  186 taagttcaaataaactaattcaaaca 211  Q
    |||| ||||||||  |||| ||||||    
T  2460095 taagctcaaataagttaatccaaaca 2460070  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 4420669 - 4420730
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    |||||| |||||  ||||| ||||||||| | |||||||||||||||| |||||| ||||||    
T  4420669 ggagagcttatggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataag 4420730  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 30863292 - 30863333
Alignment:
Q  106 ctgaaaacaacatatgaacatgtcataagttgtttttataag 147  Q
    ||||||||||| |||| ||||||||||||||||||| |||||    
T  30863292 ctgaaaacaacttatgtacatgtcataagttgttttcataag 30863333  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 2112248 - 2112280
Alignment:
Q  108 gaaaacaacatatgaacatgtcataagttgttt 140  Q
    ||||||||| |||||||||||||||||||||||    
T  2112248 gaaaacaacttatgaacatgtcataagttgttt 2112280  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 3528829 - 3528885
Alignment:
Q  86 ggagagtttatgagaataatctgaaaacaacatatgaacatgtcataagttgttttt 142  Q
    |||||| |||||| |||||  |||||||||  |||| ||||||||||||||||||||    
T  3528829 ggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgttttt 3528885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 4080963 - 4081067
Alignment:
Q  107 tgaaaacaacatatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgctagtaaataagttcaaataaactaattc 206  Q
    |||||||||| |||||||||| ||||||||||||| ||||  ||||| | || ||  ||||||  ||||||  |||| ||||||| ||||||   |||||    
T  4080963 tgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaatagtgccacaagcacttatgtcagtagataagtttaaataagacaattc 4081062  T
Q  207 aaaca 211  Q
    |||||    
T  4081063 aaaca 4081067  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 6536987 - 6537023
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6536987 aataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 9027606 - 9027654
Alignment:
Q  88 agagtttatgagaataatctgaaaacaacatatgaacatgtcataagtt 136  Q
    |||| |||||| ||||| ||||||||||| |||| ||||||||||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataagtt 9027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 27693451 - 27693391
Alignment:
Q  118 tatgaacatgtcataagttgtttttataagttctcttacattgtatcacaagtgcttatgc 178  Q
    |||||||||||||||||||||||  |||| |||||| | || || |||||||| |||||||    
T  27693451 tatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatgc 27693391  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 33737775 - 33737835
Alignment:
Q  93 ttatgagaataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    |||||| ||||| || ||| |||| ||||||| |||||||| |||| ||||||||||||||    
T  33737775 ttatgaaaataagctaaaaccaacttatgaacgtgtcataaattgtgtttataagttctct 33737835  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 34037355 - 34037319
Alignment:
Q  163 tcacaagtgcttatgctagtaaataagttcaaataaa 199  Q
    |||||||| |||||||||||| |||||||||||||||    
T  34037355 tcacaagtacttatgctagtagataagttcaaataaa 34037319  T

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Target: scaffold0608 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 9667 - 9614
Alignment:
Q  100 aataatctgaaaacaacatatgaacatgtcataagttgtttttataagttctct 153  Q
    ||||| || |||||| | ||||||||||| |||||||||||| |||||||||||    
T  9667 aataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctct 9614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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