View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_69 (Length: 355)
Name: NF11788_low_69
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_69 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 46632751 - 46632397
Alignment:
| Q |
1 |
ttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcataggacatttgttctgcataaga |
100 |
Q |
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| T |
46632751 |
ttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcataggacatttgttctgcataaga |
46632652 |
T |
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| Q |
101 |
tggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagctgtactgaagcaatcctcaaaa |
200 |
Q |
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| T |
46632651 |
tggcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagctgtactgaagcaatcctcaaaa |
46632552 |
T |
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| Q |
201 |
tggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtgtaggaaccatttatggaatatc |
300 |
Q |
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| T |
46632551 |
tggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatactttgtagttttcttctttcgtataggaaccatttatggaatatc |
46632452 |
T |
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| Q |
301 |
tattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtaga |
355 |
Q |
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| T |
46632451 |
tattttcagattgctcataatgttgtctatttacactgctgcttctgcttgtaga |
46632397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 15507042 - 15506783
Alignment:
| Q |
3 |
ggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaacttggatacaaagggtagtcataggacatttgttctgcataagatg |
102 |
Q |
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| T |
15507042 |
ggtgcactttgtgatctgactttagctcttgatgattctgtgttagccatgtaatttggaaataatggatagtcattgggaatggattcttcataggatt |
15506943 |
T |
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| Q |
103 |
gcctagggaaagcaaaagggtgatttgattcatctgtttttgatatagcagaatagcattgaggactgctttgagctgtactga---agcaatcctcaaa |
199 |
Q |
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| T |
15506942 |
gtctagtgaaagcaaaaggaagctttgaattatctactcttgaaacagctgagtagtaatagggactgttctgtgctgtactgagggaacaatcctcaaa |
15506843 |
T |
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| Q |
200 |
atggccactgcatgcttttggactcaattctgttaaagctgatggagctggtgatacttt |
259 |
Q |
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| T |
15506842 |
atgtccactgcatgctcttgggcttgaatctgttagtgctgatggtgttggtgattcttt |
15506783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45768322 - 45768377
Alignment:
| Q |
1 |
ttggtgcactttgtgatctaactttagctcttgatgattctgtattagccatgtaa |
56 |
Q |
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| T |
45768322 |
ttggtgcactttgtgatctaaccttagctctagaagattcagtgtttgccatgtaa |
45768377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 11979843 - 11979777
Alignment:
| Q |
257 |
tttgtagttttcttctttcgtgtaggaaccatttatggaatatctattttcagattgctcataatgt |
323 |
Q |
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| T |
11979843 |
tttgtatttttcttcttttgagtaggaaccatttgtggaatatctatgttcaaattgttcataatgt |
11979777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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