View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_70 (Length: 354)
Name: NF11788_low_70
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 5401459 - 5401785
Alignment:
| Q |
20 |
cctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401459 |
cctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattca |
5401558 |
T |
|
| Q |
120 |
cctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401559 |
cctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttg |
5401658 |
T |
|
| Q |
220 |
attggagacatcacactgaatatagtgaacagggttatcaacattccacattggtcgtggacggcgagccacgccataaaccttccatggtccacctggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5401659 |
attggagacatcacactgaatatagtgaacagggttatcaacattccacattggtcgtggacggcgagccacgccataaaccttccatggtccaactggt |
5401758 |
T |
|
| Q |
320 |
gtgtcttttagaggtaggatctctgct |
346 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
5401759 |
gtgtcttttagaggtaggatctctgct |
5401785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 44 - 346
Target Start/End: Original strand, 5395336 - 5395638
Alignment:
| Q |
44 |
tgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattcacctcacaattttgagcctccgtgg |
143 |
Q |
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||||| ||||||||| ||||||| ||| ||||||||| |||||| ||||||||||||| ||||| | ||| || || || || ||||||||||| || | |
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| T |
5395336 |
tgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtag |
5395435 |
T |
|
| Q |
144 |
gtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgattggagacatcacactgaatata |
243 |
Q |
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| |||||||||||||||||||||| ||||| ||||| || ||||| || || ||||||||||| || || ||||| | |||||||| || ||||| || |
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| T |
5395436 |
gcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttttggtcagagacatcgcattgaatgta |
5395535 |
T |
|
| Q |
244 |
gtgaacagggttatcaacattccacattggtcgtggacggcgagccacgccataaaccttccatggtccacctggtgtgtcttttagaggtaggatctct |
343 |
Q |
| |
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||||||| |||||| | |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||| |||||| |
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| T |
5395536 |
gtgaacatacttatcagcgttccacgttggttgtggacggcgagccacaccataaaccttccatggaccacctggtgtgtcgtcgagaggtagaatctct |
5395635 |
T |
|
| Q |
344 |
gct |
346 |
Q |
| |
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||| |
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| T |
5395636 |
gct |
5395638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 346
Target Start/End: Original strand, 5391525 - 5391828
Alignment:
| Q |
44 |
tgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattcacctcacaattttgagcctccgtgg |
143 |
Q |
| |
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||||| |||||||| ||||||| ||| ||||||||| |||||| ||||||||||||| ||||| | ||| || || | || ||||||||||| |||| |
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| T |
5391525 |
tgaagggacacatgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctctgtgg |
5391624 |
T |
|
| Q |
144 |
gtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgattggagacatcacactgaatata |
243 |
Q |
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| |||||||||||||||||||||| ||||| ||||| || ||||| || || |||||||||||||| || ||||||| |||||||| || ||||| || |
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| T |
5391625 |
gcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgatcagagacatcgcattgaatgta |
5391724 |
T |
|
| Q |
244 |
gtgaacagggttatcaacattccac-attggtcgtggacggcgagccacgccataaaccttccatggtccacctggtgtgtcttttagaggtaggatctc |
342 |
Q |
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|| |||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| |
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| T |
5391725 |
gtcaacataattatcagtgttccacgtttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtcgagaggtaaaatctc |
5391824 |
T |
|
| Q |
343 |
tgct |
346 |
Q |
| |
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|||| |
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|
| T |
5391825 |
tgct |
5391828 |
T |
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