View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_73 (Length: 344)
Name: NF11788_low_73
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 12812739 - 12812705
Alignment:
| Q |
301 |
accaccatagcctcctccagctccacctcctttgc |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12812739 |
accaccatagcctcctccagctccacctcctttgc |
12812705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 332
Target Start/End: Complemental strand, 12749716 - 12749685
Alignment:
| Q |
301 |
accaccatagcctcctccagctccacctcctt |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
12749716 |
accaccatagcctcctccagctccacctcctt |
12749685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 332
Target Start/End: Complemental strand, 12812808 - 12812777
Alignment:
| Q |
301 |
accaccatagcctcctccagctccacctcctt |
332 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
12812808 |
accaccatagcctcctccagctccacctcctt |
12812777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 12749647 - 12749613
Alignment:
| Q |
301 |
accaccatagcctcctccagctccacctcctttgc |
335 |
Q |
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|
||||||||| ||||||||||||||||||||||||| |
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| T |
12749647 |
accaccataacctcctccagctccacctcctttgc |
12749613 |
T |
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