View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_79 (Length: 334)
Name: NF11788_low_79
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_79 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 163 - 334
Target Start/End: Complemental strand, 19796207 - 19796036
Alignment:
| Q |
163 |
agggtggaagggtactgagaaagactccatcgtggctgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaag |
262 |
Q |
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| T |
19796207 |
agggtggaagggtactgagaaagactccatcgtgactgaagaggtggcagcgagagctaaggttgagaaagaaggtgctcacgttttgaaggaagagaag |
19796108 |
T |
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| Q |
263 |
aggattgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcatgattgt |
334 |
Q |
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| T |
19796107 |
aggattgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgt |
19796036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19796378 - 19796269
Alignment:
| Q |
1 |
ccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagagtggaaggaaaggaaatctggatccaaaaggaaatcttcatcaggatcaacccct |
100 |
Q |
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| T |
19796378 |
ccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagagtggagggaaaggaaatctggatccaaaaggaaatcttcatcaggatcaacccct |
19796279 |
T |
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| Q |
101 |
tttttaagga |
110 |
Q |
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| T |
19796278 |
tttttaagga |
19796269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 19785415 - 19785549
Alignment:
| Q |
198 |
ctgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcgtta |
297 |
Q |
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| T |
19785415 |
ctgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgtta |
19785514 |
T |
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| Q |
298 |
tactaccgatcccaattttaagtttcttcatgatt |
332 |
Q |
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| T |
19785515 |
cactaccgaccctcattttaagtttcttcatgatt |
19785549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19785224 - 19785295
Alignment:
| Q |
1 |
ccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagagtggaaggaaaggaaatctggatccaa |
72 |
Q |
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| T |
19785224 |
ccgtattctccaaggttctggaattcgtgaaatccagaaagaagagtggaatgaaaggaaatctggatccaa |
19785295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 15835478 - 15835383
Alignment:
| Q |
199 |
tgaagaggtggcagcgagagctaaggctgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcg |
294 |
Q |
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| T |
15835478 |
tgaagaggtggctgcgagagctaaggctcagaaagaaactgctcacgctttgaaggaagagaagaggattgccttggctaagaagcttgttgatcg |
15835383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15835616 - 15835568
Alignment:
| Q |
1 |
ccgtcttctcgaaggttctgaagttcgcaaaacacagaaagaagagtgg |
49 |
Q |
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| T |
15835616 |
ccgtcttctcgaaggttttgaagttcgcgaaaagcagaaagaagagtgg |
15835568 |
T |
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