View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_81 (Length: 330)
Name: NF11788_low_81
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 18044746 - 18045052
Alignment:
| Q |
16 |
agtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatc |
115 |
Q |
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| T |
18044746 |
agtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaatttacgagaactagtgtatcctgcatc |
18044845 |
T |
|
| Q |
116 |
gatgaaagacttatccaaacagttgcaacattcaat-----caacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18044846 |
gatgaaagacttatccaaacagttgcaacattcaatataatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggct |
18044945 |
T |
|
| Q |
211 |
ctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18044946 |
ctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctc |
18045045 |
T |
|
| Q |
311 |
ggtattc |
317 |
Q |
| |
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|||||| |
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| T |
18045046 |
agtattc |
18045052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 48369889 - 48369596
Alignment:
| Q |
17 |
gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatcg |
116 |
Q |
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| T |
48369889 |
gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgtagcctgcatcg |
48369790 |
T |
|
| Q |
117 |
atgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctctttag |
216 |
Q |
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| T |
48369789 |
acaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccctggctctttgg |
48369690 |
T |
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| Q |
217 |
ataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctc |
310 |
Q |
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||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||||||| | || ||||||||| ||||| |||||||| ||||| |
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| T |
48369689 |
ataaatcaacatggcttgtgaactcaacaacttccaatttctcttctactaataattttgccgctgcttccacggctaactgtaaatctttctc |
48369596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 13978994 - 13979254
Alignment:
| Q |
16 |
agtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatc |
115 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||| || ||| | |||| || ||| |
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| T |
13978994 |
agtaatgatcaagaatcttttggaatgttcctttcccaacaactcggagttctaaggccccaatagtgttggccttgcgcgaaaaactgtaggatggatc |
13979093 |
T |
|
| Q |
116 |
gatgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctcttta |
215 |
Q |
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||||||||||||||||||| |||||||||| | |||||| || ||| |||||||| || | |||||||||||||||||||||| || ||||| ||| |
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| T |
13979094 |
agtgaaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttcaccactaatttcccagaatattacatagtttccaggctcatta |
13979193 |
T |
|
| Q |
216 |
gataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttag |
276 |
Q |
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|||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
13979194 |
gataaatcaacatggcttgtgaattcaataacttccaattcctcttctgctaataatttag |
13979254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 10241557 - 10241606
Alignment:
| Q |
18 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
67 |
Q |
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||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
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| T |
10241557 |
taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
10241606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 10263528 - 10263577
Alignment:
| Q |
18 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
67 |
Q |
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||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
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| T |
10263528 |
taatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
10263577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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