View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_82 (Length: 327)
Name: NF11788_low_82
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 35398200 - 35397892
Alignment:
| Q |
1 |
tgctaaggccaaagtcagttagattccaaacttctatctagccacacataattaggaactgtgtaacgatcattctagctggatttgttgatcgcataaa |
100 |
Q |
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| T |
35398200 |
tgctaaggccaaagtcagttagattccaaacttctatctggccacacacaattaggaactgtgtaacaaccattctagctggatttgttgatagcataaa |
35398101 |
T |
|
| Q |
101 |
tatttgtgttgaaaattgactcaaaattt-gatgattgaagtattgaaaaaatcgcggtacgattttggatgtttctgggaggttgtaactggaaaaatc |
199 |
Q |
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| T |
35398100 |
tatttgtgttgaaaattgactaaaaattttgatgattgaagtattggaaaaatcgtggcaagattttggatgcttctgggaggttgtaactggaaaaatc |
35398001 |
T |
|
| Q |
200 |
gtggcacaatgcagaggcaacataacacgatgcaggagataagttcaagtattgtattgttacgtaccaactccttagtggcacgataggtggcaacgtg |
299 |
Q |
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| T |
35398000 |
gtggcatgatgcagaggcaacatagcacgatgcaggagataagttcaagtattgtattcttacgtaccaactccttagtggcacgataggtggcaacgtg |
35397901 |
T |
|
| Q |
300 |
gcatgatgc |
308 |
Q |
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||||||||| |
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| T |
35397900 |
gcatgatgc |
35397892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 26352269 - 26352306
Alignment:
| Q |
225 |
cacgatgcaggagataagttcaagtattgtattgttac |
262 |
Q |
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| T |
26352269 |
cacgatgcaggagataagatcaagtattgtactgttac |
26352306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 8871583 - 8871522
Alignment:
| Q |
170 |
tgtttctgggaggttgtaactggaaaaatcgtggcacaatgcagaggcaacataacacgatg |
231 |
Q |
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| T |
8871583 |
tgtttatggtaggctgtcactggaaaaatcgtggcacgatgcagaggcaacatgacacgatg |
8871522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 40320784 - 40320851
Alignment:
| Q |
188 |
actggaaaaatcgtggcacaatgcagaggcaacataacacgatgcaggagataagttcaagtattgta |
255 |
Q |
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| T |
40320784 |
actggaaaaatcgtggcacaatgtaggaggaacgtggcacgatgcaggagataagagcaagtattgta |
40320851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 28074099 - 28074166
Alignment:
| Q |
188 |
actggaaaaatcgtggcacaatgcagaggcaacataacacgatgcaggagataagttcaagtattgta |
255 |
Q |
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| T |
28074099 |
actggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggagataagatcaagtattgta |
28074166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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