View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_low_86 (Length: 316)

Name: NF11788_low_86
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_low_86
NF11788_low_86
[»] chr7 (18 HSPs)
chr7 (19-173)||(48930191-48930341)
chr7 (210-252)||(48930095-48930137)
chr7 (254-302)||(21919685-21919733)
chr7 (254-302)||(31743663-31743711)
chr7 (256-302)||(29688923-29688969)
chr7 (212-254)||(40246762-40246804)
chr7 (257-302)||(5215386-5215431)
chr7 (254-303)||(27567157-27567206)
chr7 (251-303)||(38882812-38882864)
chr7 (256-302)||(1343382-1343428)
chr7 (262-304)||(27800033-27800075)
chr7 (256-286)||(42584139-42584169)
chr7 (257-302)||(23182390-23182435)
chr7 (254-303)||(24204611-24204660)
chr7 (263-304)||(40856544-40856585)
chr7 (257-302)||(48460251-48460296)
chr7 (257-301)||(22639367-22639411)
chr7 (255-303)||(26605054-26605101)
[»] chr8 (13 HSPs)
chr8 (256-302)||(23870267-23870313)
chr8 (255-302)||(9508855-9508902)
chr8 (257-302)||(41592-41637)
chr8 (255-296)||(5215320-5215361)
chr8 (256-302)||(12632903-12632949)
chr8 (258-304)||(28886041-28886087)
chr8 (254-302)||(32887663-32887711)
chr8 (262-304)||(12801465-12801507)
chr8 (256-302)||(38764737-38764783)
chr8 (257-302)||(31893333-31893378)
chr8 (262-302)||(41423702-41423742)
chr8 (263-303)||(43332104-43332144)
chr8 (263-303)||(44309926-44309966)
[»] chr5 (18 HSPs)
chr5 (256-302)||(7080472-7080518)
chr5 (256-302)||(39939032-39939078)
chr5 (257-302)||(5512682-5512727)
chr5 (257-302)||(34901657-34901702)
chr5 (256-301)||(40524083-40524128)
chr5 (254-302)||(5204614-5204662)
chr5 (257-301)||(31588597-31588641)
chr5 (254-302)||(40756538-40756586)
chr5 (255-302)||(5140667-5140714)
chr5 (257-303)||(4039469-4039515)
chr5 (256-310)||(39979698-39979751)
chr5 (254-299)||(23690498-23690543)
chr5 (256-286)||(4429797-4429827)
chr5 (257-303)||(6335751-6335797)
chr5 (257-303)||(13593281-13593327)
chr5 (257-303)||(16602360-16602406)
chr5 (255-283)||(4367169-4367197)
chr5 (263-303)||(12336575-12336615)
[»] chr4 (25 HSPs)
chr4 (256-302)||(22789581-22789627)
chr4 (256-304)||(27950257-27950305)
chr4 (256-302)||(21722554-21722600)
chr4 (257-303)||(32570728-32570774)
chr4 (257-302)||(19527085-19527130)
chr4 (254-302)||(4491217-4491265)
chr4 (261-304)||(25607694-25607737)
chr4 (259-302)||(39103539-39103582)
chr4 (255-302)||(49286686-49286733)
chr4 (256-302)||(34584181-34584227)
chr4 (257-302)||(595296-595341)
chr4 (258-299)||(12756367-12756408)
chr4 (256-303)||(21424502-21424549)
chr4 (257-304)||(23058765-23058811)
chr4 (256-303)||(48207438-48207485)
chr4 (256-303)||(54178780-54178827)
chr4 (257-303)||(24566367-24566413)
chr4 (256-286)||(34927101-34927131)
chr4 (257-286)||(1605590-1605619)
chr4 (257-286)||(3690890-3690919)
chr4 (257-302)||(31296530-31296575)
chr4 (257-286)||(43349052-43349081)
chr4 (257-302)||(52323966-52324011)
chr4 (265-302)||(53973464-53973501)
chr4 (257-301)||(29582329-29582372)
[»] chr3 (18 HSPs)
chr3 (257-302)||(52058514-52058559)
chr3 (258-302)||(41982391-41982435)
chr3 (256-303)||(48795438-48795485)
chr3 (257-302)||(29698322-29698367)
chr3 (257-304)||(14998147-14998194)
chr3 (257-303)||(35375511-35375557)
chr3 (257-302)||(32121899-32121944)
chr3 (257-302)||(43903434-43903479)
chr3 (257-302)||(45633526-45633571)
chr3 (256-303)||(4521268-4521315)
chr3 (256-303)||(20199708-20199755)
chr3 (257-296)||(29815496-29815535)
chr3 (256-302)||(29385044-29385090)
chr3 (257-302)||(5640020-5640065)
chr3 (254-303)||(37520699-37520747)
chr3 (261-302)||(52776453-52776494)
chr3 (254-302)||(1129126-1129173)
chr3 (258-286)||(3732246-3732274)
[»] chr1 (22 HSPs)
chr1 (254-302)||(40054949-40054997)
chr1 (257-302)||(4156142-4156187)
chr1 (257-302)||(43916346-43916391)
chr1 (257-302)||(45650369-45650414)
chr1 (254-302)||(51004787-51004835)
chr1 (256-303)||(23539941-23539988)
chr1 (256-302)||(7435875-7435921)
chr1 (257-302)||(1845073-1845118)
chr1 (257-302)||(29877702-29877747)
chr1 (257-302)||(36735512-36735557)
chr1 (256-303)||(17644389-17644436)
chr1 (257-304)||(32912211-32912258)
chr1 (256-310)||(35873935-35873987)
chr1 (256-310)||(38207528-38207581)
chr1 (257-303)||(47458888-47458934)
chr1 (256-302)||(49982455-49982501)
chr1 (262-303)||(23582133-23582174)
chr1 (257-302)||(44808766-44808811)
chr1 (256-304)||(5956525-5956572)
chr1 (255-303)||(12105158-12105205)
chr1 (255-303)||(12838130-12838178)
chr1 (255-303)||(41568804-41568852)
[»] chr2 (17 HSPs)
chr2 (257-304)||(45690499-45690546)
chr2 (256-302)||(8333890-8333936)
chr2 (257-303)||(38073106-38073152)
chr2 (256-302)||(41555430-41555476)
chr2 (257-302)||(38030557-38030602)
chr2 (256-303)||(11088586-11088633)
chr2 (258-303)||(9221155-9221200)
chr2 (257-302)||(34188896-34188941)
chr2 (255-291)||(5819687-5819723)
chr2 (256-303)||(2859358-2859405)
chr2 (258-301)||(12002707-12002750)
chr2 (256-303)||(12182919-12182966)
chr2 (256-303)||(28318040-28318087)
chr2 (257-303)||(37781866-37781912)
chr2 (257-303)||(42640850-42640896)
chr2 (257-302)||(15362469-15362514)
chr2 (254-302)||(9589476-9589523)
[»] chr6 (16 HSPs)
chr6 (256-302)||(10965985-10966031)
chr6 (257-303)||(19474032-19474078)
chr6 (252-302)||(14507982-14508032)
chr6 (257-302)||(1705967-1706012)
chr6 (257-302)||(10887809-10887854)
chr6 (259-304)||(16893257-16893302)
chr6 (255-310)||(1339727-1339781)
chr6 (256-303)||(6295738-6295785)
chr6 (256-303)||(6302548-6302595)
chr6 (255-302)||(21294151-21294198)
chr6 (256-302)||(24249167-24249213)
chr6 (257-302)||(2994322-2994367)
chr6 (262-303)||(14872332-14872373)
chr6 (254-311)||(23416851-23416906)
chr6 (263-303)||(229817-229857)
chr6 (255-303)||(24151122-24151170)
[»] scaffold0271 (1 HSPs)
scaffold0271 (257-302)||(17022-17067)
[»] scaffold0009 (1 HSPs)
scaffold0009 (257-302)||(214501-214546)
[»] scaffold0131 (1 HSPs)
scaffold0131 (257-301)||(11015-11059)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 48930341 - 48930191
Alignment:
Q  19 ctcattgcagtgaccatagtgccatgcatgcaacacagacaaatgctataaaagaacattctttaattccaatgcagtcacggaacaatcaggataagtt 118  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48930341 ctcattgcagtgaccatagtgccatgca----acacagacaaatgctataaaagaacattctttaattccaatgcagtcacggaacaatcaggataagtt 48930246  T
Q  119 gagggttttcactttctgcaccgacaaaaatgtaaaactggtaaagatgtgtgtg 173  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48930245 gagggttttcactttctgcaccgacaaaaatgtaatactggtaaagatgtgtgtg 48930191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 48930137 - 48930095
Alignment:
Q  210 acacaaaattaaacttcattcaaatgataaaataaggatagta 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48930137 acacaaaattaaacttcattcaaatgataaaataaggatagta 48930095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 21919685 - 21919733
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  21919685 atagggaacttctacggtacacctcacaaattgaggtgtaccggtactc 21919733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 31743711 - 31743663
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  31743711 atagggaacttctacggtacacctcacaaattgtggtgtaccggtactc 31743663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 29688923 - 29688969
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||    
T  29688923 agggaacttctacggtacacctcataaattgaggtgtaccggtactc 29688969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 40246804 - 40246762
Alignment:
Q  212 acaaaattaaacttcattcaaatgataaaataaggatagtaca 254  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  40246804 acaaaattaaacttcattcaaatgataaaataaagatactaca 40246762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 5215431 - 5215386
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||| |||||||||| | |||||||||||||    
T  5215431 gggaacttctacggtacacatcacaaattgaggtgtaccggtactc 5215386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 27567157 - 27567206
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||    
T  27567157 atagggaacttttacggtacacctcacaaatttaggtgtaccggtactct 27567206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 38882812 - 38882864
Alignment:
Q  251 tacatagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||| |||||||||||||||||||||| ||||| || | ||||||||||||||    
T  38882812 tacaaagggaacttctacggtacacctaacaaaatgaggtgtaccggtactct 38882864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 1343428 - 1343382
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||| |||||||||||||||| || |||||| |||||||||||||||    
T  1343428 aggggacttctacggtacaccacataaattgagatgtaccggtactc 1343382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 27800033 - 27800075
Alignment:
Q  262 cttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  27800033 cttctacggtacacctcataaattgaggtgtaccggtactctc 27800075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 42584169 - 42584139
Alignment:
Q  256 agggaacttctacggtacacctcacaaattg 286  Q
    |||||||||||||||||||||||||||||||    
T  42584169 agggaacttctacggtacacctcacaaattg 42584139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 23182390 - 23182435
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||  | ||||| |||||||    
T  23182390 gggaacttctacggtacacctcacaaattaaggtgtactggtactc 23182435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 24204611 - 24204660
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||| ||||||| | ||| || ||||||||||||||||    
T  24204611 atagggaacttctacgatacacctaataaaatgagatgtaccggtactct 24204660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 40856544 - 40856585
Alignment:
Q  263 ttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||||||||| | ||||||| |||||||    
T  40856544 ttctacggtacacctcacaaattgaggtgtaccgatactctc 40856585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 48460251 - 48460296
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||    
T  48460251 gggaacttctatggtacacctcacaaattgaggtataccggtactc 48460296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 22639367 - 22639411
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||    
T  22639367 gggagcttctacggtacacctcacaaattgaggtgtaccgatact 22639411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 26605054 - 26605101
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||| |||||||| || | ||||||||||||||    
T  26605054 tagggaacttctacggtaca-ctcacaaaatgaggtgtaccggtactct 26605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 23870267 - 23870313
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23870267 agggaacttctacggtacacctcacaaattggggtgtaccggtactc 23870313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 9508855 - 9508902
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  9508855 tagggaacttctacggtacacctcacaaattagggtgtaccggtactc 9508902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 41592 - 41637
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  41592 gggaatttctacggtacacctcacaaattggggtgtaccggtactc 41637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 5215320 - 5215361
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccg 296  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  5215320 tagggaacttctacggtacacctcacaaattgagatgtaccg 5215361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 12632903 - 12632949
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||    
T  12632903 agggaacttctacggtacacctcacaaattgaggtgtaccgatactc 12632949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 28886087 - 28886041
Alignment:
Q  258 ggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||    
T  28886087 ggaacttctacggtacacctcacaaattgaggtgtaccgatactctc 28886041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 32887663 - 32887711
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||| |||| |||||| | |||||||||||||    
T  32887663 atagggaacttctacggtacatctcataaattgaggtgtaccggtactc 32887711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 12801507 - 12801465
Alignment:
Q  262 cttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  12801507 cttctacggtacacctcataaattgaggtgtaccggtactctc 12801465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 38764737 - 38764783
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||| |||||||| | |||| ||||||||    
T  38764737 agggaacttctacggtacaccttacaaattgaggtgtatcggtactc 38764783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 31893333 - 31893378
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||| |||||||||||||||| | ||||||| |||||    
T  31893333 gggaacttctacgttacacctcacaaattgaggtgtaccgatactc 31893378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 41423742 - 41423702
Alignment:
Q  262 cttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  41423742 cttctgcggtatacctcacaaattggggtgtaccggtactc 41423702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 43332144 - 43332104
Alignment:
Q  263 ttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||| | ||||||| ||||||    
T  43332144 ttctacggtacacctcacaaattgaggtgtaccgatactct 43332104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 44309966 - 44309926
Alignment:
Q  263 ttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||| | ||||||| ||||||    
T  44309966 ttctacggtacacctcacaaattgaggtgtaccgatactct 44309926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 7080518 - 7080472
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7080518 agggaacttctacggtacacctcacaaattggggtgtaccggtactc 7080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 39939032 - 39939078
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  39939032 agggaacttctacggtacacctcacaaattgaggtgtaccggtactc 39939078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 5512682 - 5512727
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  5512682 gggaacttctacggtacacctcacaaattgaggtgtaccggtactc 5512727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 34901657 - 34901702
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  34901657 gggaacttctacggtacacctcataaattggggtgtaccggtactc 34901702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 40524083 - 40524128
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  40524083 agggaacttctacggtacacctcacaaattggggtgtactggtact 40524128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 5204614 - 5204662
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  5204614 atagggaacttctacggtacacctcacaaattgaggtgtatcggtactc 5204662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 31588641 - 31588597
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  31588641 gggaacttctacggtacacctcacaaattgaggtgtaccggtact 31588597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 40756538 - 40756586
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  40756538 atagggaacttctacggtacacctcacaaattgaggtgtatcggtactc 40756586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 5140667 - 5140714
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||    
T  5140667 taggaaacttctacggtacacctcacaaattgaggtgtaccggtactc 5140714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 4039469 - 4039515
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||    
T  4039469 gggaacttctacggtacacctcacaaattaaggtgtaccggtactct 4039515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 39979751 - 39979698
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactctctgcttc 310  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||    
T  39979751 agggaacttctacggtacacctcacaaattgaggtgtaccgatact-tctgcttc 39979698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 23690498 - 23690543
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggta 299  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||    
T  23690498 atagggaacttctacggtacacctcaaaaattgaggtgtaccggta 23690543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 4429827 - 4429797
Alignment:
Q  256 agggaacttctacggtacacctcacaaattg 286  Q
    |||||||||||||||||||||||||||||||    
T  4429827 agggaacttctacggtacacctcacaaattg 4429797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 6335797 - 6335751
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  6335797 gggagcttctacggtacacctcacaaattgaggtgtaccgatactct 6335751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 13593281 - 13593327
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  13593281 gggagcttctacggtacacctcacaaattgaggtgtaccgatactct 13593327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 16602360 - 16602406
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||| ||||||||||||||||||||||||| |||||| || ||||||    
T  16602360 gggagcttctacggtacacctcacaaattgagatgtaacgatactct 16602406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 4367197 - 4367169
Alignment:
Q  255 tagggaacttctacggtacacctcacaaa 283  Q
    |||||||||||||||||||||||||||||    
T  4367197 tagggaacttctacggtacacctcacaaa 4367169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 12336615 - 12336575
Alignment:
Q  263 ttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||| | ||||||| ||||||    
T  12336615 ttctacggtacacctcacaaattgaggtgtaccgatactct 12336575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 22789581 - 22789627
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  22789581 agggaacttctacggtacacctcacaaattggggtgtaccggtactc 22789627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 27950257 - 27950305
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  27950257 agggaacttctacggtacacctcacaaattgaggtgtaccggtactctc 27950305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 21722600 - 21722554
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  21722600 agggaacttctacggtacacctcacaaattggggtgtaccgatactc 21722554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 32570774 - 32570728
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  32570774 gggaacttctacggtacacctcacaaattgaggtgtaccggtactct 32570728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 19527130 - 19527085
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  19527130 gggaacttctacggtacacctcacaaattgaggtgtaccggtactc 19527085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 4491265 - 4491217
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||    
T  4491265 atagggaacttctacggtacacctcataaattgaggtgtaccggtactc 4491217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 25607694 - 25607737
Alignment:
Q  261 acttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  25607694 acttctacggtacacctcacaaattgaggtgtaccggtactctc 25607737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 39103539 - 39103582
Alignment:
Q  259 gaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  39103539 gaacttctacggtacacctcacaaattgaggtgtaccggtactc 39103582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 49286686 - 49286733
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||| ||||||||||||||||||||||||| | |||||||||||||    
T  49286686 tagggagcttctacggtacacctcacaaattgaggtgtaccggtactc 49286733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 34584181 - 34584227
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||    
T  34584181 agggaacttctacggtacacctcacaaattgaggtgtaccgatactc 34584227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 595296 - 595341
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||    
T  595296 gggaatttctacggtacacctcacaaattgaggtgtaccggtactc 595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 12756408 - 12756367
Alignment:
Q  258 ggaacttctacggtacacctcacaaattgggatgtaccggta 299  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  12756408 ggaacttctacggtacacctcacaaattgaggtgtaccggta 12756367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 21424549 - 21424502
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||| || ||||| || ||||||||||||||||    
T  21424549 agggaacttctacggtacatctaacaaaatgagatgtaccggtactct 21424502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 23058765 - 23058811
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||    
T  23058765 gggaacttctacggtacac-tcacaaagtgagatgtaccggtactctc 23058811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 48207485 - 48207438
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  48207485 agggagcttctacggtacacctcacaaattgaggtgtaccgatactct 48207438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 54178827 - 54178780
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  54178827 agggagcttctacggtacacctcacaaattgaggtgtaccgatactct 54178780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 24566367 - 24566413
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||    
T  24566367 gggaacttctacggtacacctaacaaaatgaggtgtaccggtactct 24566413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Original strand, 34927101 - 34927131
Alignment:
Q  256 agggaacttctacggtacacctcacaaattg 286  Q
    |||||||||||||||||||||||||||||||    
T  34927101 agggaacttctacggtacacctcacaaattg 34927131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 1605590 - 1605619
Alignment:
Q  257 gggaacttctacggtacacctcacaaattg 286  Q
    ||||||||||||||||||||||||||||||    
T  1605590 gggaacttctacggtacacctcacaaattg 1605619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 3690919 - 3690890
Alignment:
Q  257 gggaacttctacggtacacctcacaaattg 286  Q
    ||||||||||||||||||||||||||||||    
T  3690919 gggaacttctacggtacacctcacaaattg 3690890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 31296530 - 31296575
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||| ||||| ||||||||||||||| | |||||||||||||    
T  31296530 gggaacttttacgggacacctcacaaattgaggtgtaccggtactc 31296575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 43349052 - 43349081
Alignment:
Q  257 gggaacttctacggtacacctcacaaattg 286  Q
    ||||||||||||||||||||||||||||||    
T  43349052 gggaacttctacggtacacctcacaaattg 43349081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 52323966 - 52324011
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||| ||||||||||||||||||| | ||||||| |||||    
T  52323966 gggaacttctgcggtacacctcacaaattgaggtgtaccgatactc 52324011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 53973464 - 53973501
Alignment:
Q  265 ctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||| | |||||||||||||    
T  53973464 ctacggtacacctcacaaattgaggtgtaccggtactc 53973501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 29582372 - 29582329
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||    
T  29582372 gggaacttctacggtaca-ctcacaaattgaggtgtaccggtact 29582329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 52058514 - 52058559
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  52058514 gggaacttctacggtacacctcacaaattggggtgtaccggtactc 52058559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 41982391 - 41982435
Alignment:
Q  258 ggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  41982391 ggaacttctacggtacacctcacaaattggggtgtaccggtactc 41982435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 48795438 - 48795485
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  48795438 agggaacttctacggtacacctcacaaattgaggtgtaccggtactct 48795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 29698322 - 29698367
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  29698322 gggaacttctacggtacacctcacaaattgaggtgtaccggtactc 29698367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 14998147 - 14998194
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||    
T  14998147 gggaacttctacggtacacctcacaaattgtggtgtatcggtactctc 14998194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 35375511 - 35375557
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||    
T  35375511 gggaacttctacggtacacctcacaaattgaggtgtatcggtactct 35375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 32121899 - 32121944
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||| || | |||||||||||||    
T  32121899 gggaacttctacggtacacctcacaaagtgaggtgtaccggtactc 32121944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 43903479 - 43903434
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||    
T  43903479 gggaacttctacggtacacctcacaaattgaggtgtatcggtactc 43903434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 45633571 - 45633526
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||| |||||||||| |||||||||| |||||||||||||    
T  45633571 gggaacttctgcggtacaccttacaaattggggtgtaccggtactc 45633526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 4521268 - 4521315
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  4521268 agggagcttctacggtacacctcacaaattgaggtgtaccgatactct 4521315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 20199755 - 20199708
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  20199755 agggagcttctacggtacacctcacaaattgaggtgtaccgatactct 20199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 29815535 - 29815496
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccg 296  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  29815535 gggaacttctacggtacacctcacaaattgaggtgtaccg 29815496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 29385090 - 29385044
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||| |||||||||||||||||||||||| | ||||||| |||||    
T  29385090 agggaatttctacggtacacctcacaaattgaggtgtaccgatactc 29385044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 5640065 - 5640020
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||| |||| |||||||||| ||||||| |||||||||||||    
T  5640065 gggaacttatacgatacacctcaccaattggggtgtaccggtactc 5640020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 37520699 - 37520747
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||| |||||||| || | ||||||||||||||    
T  37520699 atagggaacttctacggtaca-ctcacaaaatgaggtgtaccggtactct 37520747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 52776453 - 52776494
Alignment:
Q  261 acttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||| |||||| | |||||||||||||    
T  52776453 acttctacggtacacctcataaattgaggtgtaccggtactc 52776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 1129126 - 1129173
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||| |||||||| || | |||||||||||||    
T  1129126 atagggaacttctacggtaca-ctcacaaagtgaggtgtaccggtactc 1129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 3732246 - 3732274
Alignment:
Q  258 ggaacttctacggtacacctcacaaattg 286  Q
    |||||||||||||||||||||||||||||    
T  3732246 ggaacttctacggtacacctcacaaattg 3732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 40054997 - 40054949
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  40054997 atagggaacttctacggtacacctcacaaattgaggtgtaccggtactc 40054949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 4156187 - 4156142
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  4156187 gggaacttctacggtacacctcacaaattggagtgtaccggtactc 4156142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 43916346 - 43916391
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  43916346 gggaacttctacggtacacctcacaaattgaggtgtaccggtactc 43916391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 45650414 - 45650369
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  45650414 gggaacttctacggtatacctcacaaattgagatgtaccggtactc 45650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 51004787 - 51004835
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||| |||||||||||||||||||||||| | |||||||||||||    
T  51004787 atagggaatttctacggtacacctcacaaattgaggtgtaccggtactc 51004835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 23539941 - 23539988
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||| |||||| | ||||||||||||||    
T  23539941 agggaacttctacggtacacctcagaaattgaggtgtaccggtactct 23539988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 7435921 - 7435875
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||    
T  7435921 agggaacttctacggtacacctcacaaattgaggtgtatcggtactc 7435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 1845073 - 1845118
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||    
T  1845073 gggaacttctacggtgcacctcacaaattgaggtgtaccggtactc 1845118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 29877702 - 29877747
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||    
T  29877702 gggaacttctacggtacacctcataaatttgggtgtaccggtactc 29877747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 36735512 - 36735557
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||    
T  36735512 gggaacttctacggtacacctcataaattggagtgtaccggtactc 36735557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 17644389 - 17644436
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||||    
T  17644389 agggaatttctacggtacatctcacaaattgagatgtatcggtactct 17644436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 32912211 - 32912258
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  32912211 gggaacttctacagtacacctcacaaattgaggtgtatcggtactctc 32912258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 35873935 - 35873987
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactctctgcttc 310  Q
    ||||||||||||||||||| |||||||| || |||||||||||||| ||||||||    
T  35873935 agggaacttctacggtaca-ctcacaaagtgagatgtaccggtact-tctgcttc 35873987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 38207528 - 38207581
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactctctgcttc 310  Q
    |||||||||||||||||||||||| |||||| | |||| ||||||| ||||||||    
T  38207528 agggaacttctacggtacacctcataaattgaggtgtatcggtact-tctgcttc 38207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 47458934 - 47458888
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  47458934 gggagcttctacggtacacctcacaaattgaggtgtaccgatactct 47458888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 49982455 - 49982501
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||| |||||| | ||||||| |||||    
T  49982455 agggaacttctacggtacacctcataaattgaggtgtaccgatactc 49982501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 23582133 - 23582174
Alignment:
Q  262 cttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||||||| | ||||||| ||||||    
T  23582133 cttctacggtacacctcacaaattgaggtgtaccgatactct 23582174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 44808811 - 44808766
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||| ||||||||||| | ||||||| |||||    
T  44808811 gggaacttctacggtacatctcacaaattgaggtgtaccgatactc 44808766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 5956525 - 5956572
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    ||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  5956525 agggaacttctacggtacacc-cacaaattaagctgtaccggtactctc 5956572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 12105158 - 12105205
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||| |||||||| || | ||||||||||||||    
T  12105158 tagggaacttctacggtaca-ctcacaaaatgaggtgtaccggtactct 12105205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 12838178 - 12838130
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||| ||||||||| ||||| || | ||||||||||||||    
T  12838178 tagggaacttctaaggtacacctaacaaaatgaggtgtaccggtactct 12838130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 41568852 - 41568804
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||| ||||||||||||||||||||||||  | ||||||| ||||||    
T  41568852 tagggagcttctacggtacacctcacaaatttaggtgtaccgatactct 41568804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 45690499 - 45690546
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  45690499 gggaacttctacggtacacctcacaaattgaggtgtaccggtactctc 45690546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 8333890 - 8333936
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  8333890 agggaacttctacggtacacctcacaaattgaggtgtaccggtactc 8333936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 38073106 - 38073152
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  38073106 gggaacttctacggtacacctcacaaattgaggtgtaccggtactct 38073152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 41555430 - 41555476
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  41555430 agggaacttctacggtacacctcacaaattgaggtgtaccggtactc 41555476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 38030557 - 38030602
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  38030557 gggaacttctacgatacacctcacaaattggggtgtaccggtactc 38030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 11088633 - 11088586
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||    
T  11088633 agggaacttctacggtacacctcacaaattgaggtgtaccagtactct 11088586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 9221200 - 9221155
Alignment:
Q  258 ggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  9221200 ggaacttttacggtacacctcataaattgggatgtaccgatactct 9221155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 34188941 - 34188896
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||    
T  34188941 gggaacttctacggtacaccttacaaattgaggtgtaccggtactc 34188896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 5819723 - 5819687
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatg 291  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5819723 tagggaacttctacggtacacctcacaaattgagatg 5819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 2859358 - 2859405
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||| |||| |||||| | ||||||||||||||    
T  2859358 agggaacttctacggtacatctcataaattgaggtgtaccggtactct 2859405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 12002750 - 12002707
Alignment:
Q  258 ggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    ||||||||||||||||||||||||||||| | |||| |||||||    
T  12002750 ggaacttctacggtacacctcacaaattgaggtgtatcggtact 12002707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 12182966 - 12182919
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||||    
T  12182966 agggaacttctacggtacacctaacaaaatgaggtgtaccggtactct 12182919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 28318040 - 28318087
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  28318040 agggagcttctacggtacacctcacaaattgaggtgtaccgatactct 28318087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 37781866 - 37781912
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||| | |||||  |||||||    
T  37781866 gggaacttctacggtacacctcacaaattgaggtgtacatgtactct 37781912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 42640850 - 42640896
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||||    
T  42640850 gggaacttctacggcacacctcacaaattgaggtataccggtactct 42640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 15362469 - 15362514
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||| | |||||| | |||||||||||||    
T  15362469 gggaacttctacggtacaccttataaattgaggtgtaccggtactc 15362514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 9589523 - 9589476
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||| |||||||| || | |||||||||||||    
T  9589523 atagggaacttctacggtaca-ctcacaaaatgaggtgtaccggtactc 9589476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 10966031 - 10965985
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  10966031 agggaacttctacggtacacctcacaaattgaggtgtaccggtactc 10965985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 19474078 - 19474032
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  19474078 gggaacttctacggtacacctcacaaattgaggtgtaccggtactct 19474032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 14508032 - 14507982
Alignment:
Q  252 acatagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||| ||||||||||||||||||||||| |||||| | |||||||||||||    
T  14508032 acattgggaacttctacggtacacctcataaattgaggtgtaccggtactc 14507982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 1706012 - 1705967
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||    
T  1706012 gggaacttctacggtacacctcataaattgaggtgtaccggtactc 1705967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 10887809 - 10887854
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||    
T  10887809 gggaacttctacggtacacctcataaattgaggtgtaccggtactc 10887854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 16893302 - 16893257
Alignment:
Q  259 gaacttctacggtacacctcacaaattgggatgtaccggtactctc 304  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||    
T  16893302 gaacttctatggtacacctcacaaattgaggtgtaccggtactctc 16893257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 1339781 - 1339727
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactctctgcttc 310  Q
    ||||||||||||||||||||| |||||||||| | |||||| ||||| ||||||||    
T  1339781 tagggaacttctacggtacacgtcacaaattgaggtgtaccagtact-tctgcttc 1339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 6295785 - 6295738
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||    
T  6295785 agggagcttctacggtacacctcacaaattgaggtgtatcggtactct 6295738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 6302595 - 6302548
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||    
T  6302595 agggagcttctacggtacacctcacaaattgaggtgtatcggtactct 6302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 21294198 - 21294151
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||| ||||||||||||||| |||||| | |||||||||||||    
T  21294198 tagggaactcctacggtacacctcataaattgaggtgtaccggtactc 21294151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 24249213 - 24249167
Alignment:
Q  256 agggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||| |||||||| | |||| ||||||||    
T  24249213 agggaacttctacggtacaccttacaaattgaggtgtatcggtactc 24249167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 2994322 - 2994367
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||    
T  2994322 gggaacttctacagtacacctcataaattgaggtgtaccggtactc 2994367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 14872332 - 14872373
Alignment:
Q  262 cttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    ||||||||||||||||||||||||| | ||||||| ||||||    
T  14872332 cttctacggtacacctcacaaattgaggtgtaccgatactct 14872373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 23416906 - 23416851
Alignment:
Q  254 atagggaacttctacggtacacctcacaaattgggatgtaccggtactctctgcttct 311  Q
    ||||||||||||||||||||| |||||||| || | ||||||||||||| ||||||||    
T  23416906 atagggaacttctacggtaca-ctcacaaaatgaggtgtaccggtactc-ctgcttct 23416851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 229817 - 229857
Alignment:
Q  263 ttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||||||||||||||||||||| | ||||||| ||||||    
T  229817 ttctacggtacacctcacaaattgaggtgtaccgatactct 229857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 24151122 - 24151170
Alignment:
Q  255 tagggaacttctacggtacacctcacaaattgggatgtaccggtactct 303  Q
    |||||| ||||||||||||||||||||||||| | |||| || ||||||    
T  24151122 tagggagcttctacggtacacctcacaaattgaggtgtatcgatactct 24151170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 17067 - 17022
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||    
T  17067 gggaacttctacggtacacctcacaaattgaggtgtaccgatactc 17022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 214546 - 214501
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtactc 302  Q
    ||||||||||||||||||||||| ||||||   |||||||||||||    
T  214546 gggaacttctacggtacacctcataaattgaattgtaccggtactc 214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 11059 - 11015
Alignment:
Q  257 gggaacttctacggtacacctcacaaattgggatgtaccggtact 301  Q
    |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  11059 gggaacttctgcggtacacctcacaaattgaggtgtaccgatact 11015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University