View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_87 (Length: 312)
Name: NF11788_low_87
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_87 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 41795390 - 41795082
Alignment:
| Q |
1 |
tcttcttctacaaccttcatctcttcttgttcttcctctataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcactgtgtt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41795390 |
tcttcttctacatccttcatctcttcttgttcttcctctataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcattgtgtt |
41795291 |
T |
|
| Q |
101 |
catctgcgtcattagttctcatctcaacttctctctccaacaatggctcgttcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttcttt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795290 |
catctgcttcattagttctcatctcaacttctctctccaacaatggctcattcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttcttt |
41795191 |
T |
|
| Q |
201 |
ttcttcaatattggaaggtttatcatcattatcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795190 |
ttcttcaatattggaaggtttatcatc---atcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggagg |
41795094 |
T |
|
| Q |
301 |
aacatgctgttc |
312 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
41795093 |
aacatgttgttc |
41795082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 41760311 - 41760234
Alignment:
| Q |
231 |
atcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgct |
308 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41760311 |
atcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgct |
41760234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University