View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_90 (Length: 295)
Name: NF11788_low_90
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_90 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 2334502 - 2334280
Alignment:
| Q |
56 |
tacatactacataagataaaactttctctgatttaatgttttttctttgtaatcaagagttacccgtgaagaaaataaaaatgtatgtagataaaataat |
155 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2334502 |
tacatactacggaagataaaactttctctgatttaatgttttttctttgtaatcaagagttacccgtgaagaaaataaaaaagtatgtagagaaaataat |
2334403 |
T |
|
| Q |
156 |
acctaaaagaagattatttctcagtagatttatgaaatggctccaatttttagtatggagaattgatttcctttttgcgttattttttatatggctccaa |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2334402 |
acctaaaagaagattatttgtcagtagatttatgaaatggctccaattttttatatggagaattgatttcctttttgcgttattttttatatggctccaa |
2334303 |
T |
|
| Q |
256 |
ttcatgcaatggcgggtacgaag |
278 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2334302 |
ttcatgcaatggcgggtacgaag |
2334280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 54182702 - 54182898
Alignment:
| Q |
1 |
cctcccacaccacctcttccattagatccatgtcttcaaggatagt-gtctacaactacatactacataagataaaactttctctgatttaatgtttttt |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| || | || | |||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
54182702 |
cctcccacaccacctcttccattacatccatgtctgtaaggctactagttt----ctacatactacataagataaaa-tttctctgatttaatgattttt |
54182796 |
T |
|
| Q |
100 |
ctttgtaatcaagagttacccgtgaagaaaataaaaatgtatgtagataaaataatacctaaaagaagattatttctcagtagatttatgaaatggctcc |
199 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||| | || ||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
54182797 |
ctttgtaatcaagagttatctgtgaagaaaatataaaaatatgtgaagaagataatacctaa---aagattatttttcagtagatttatgaaatggctcc |
54182893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 45282846 - 45282754
Alignment:
| Q |
176 |
tcagtagatttatgaaatggctccaatttttagtatggagaattgatttcctttttgcgttattttttatatggctccaattcatgcaatggcgg |
270 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282846 |
tcagtagatttatgaaatgcctccaattgta--tatggaaaattgatttcctttttgcgttattttttatatggctccaattcatgcaatggcgg |
45282754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 45283255 - 45283207
Alignment:
| Q |
3 |
tcccacaccacctcttccattagatccatgtcttcaaggatagtgtcta |
51 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| |||| |||| |
|
|
| T |
45283255 |
tcccacaccacctcttccattacatccatgtctccaaggctagtttcta |
45283207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University