View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_91 (Length: 291)
Name: NF11788_low_91
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 43095606 - 43095457
Alignment:
| Q |
18 |
tattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtacagattt |
117 |
Q |
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| T |
43095606 |
tattcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtgcagattt |
43095507 |
T |
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| Q |
118 |
tgtttaagaaaacaaaatcaaagcatataaatgtattgattggactgaac |
167 |
Q |
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| T |
43095506 |
tgtttaagaaaacaaaatcaaagcatataaatgtattgattggactgaac |
43095457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 43095397 - 43095341
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtctctgct |
283 |
Q |
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| T |
43095397 |
ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgct |
43095341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 44188478 - 44188570
Alignment:
| Q |
20 |
ttcaacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtaca |
112 |
Q |
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| T |
44188478 |
ttcaacaattttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtatttgccactttagtaca |
44188570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 6094667 - 6094714
Alignment:
| Q |
65 |
tcccatttttctccaataggctgcaaatgtattggccactttagtaca |
112 |
Q |
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| T |
6094667 |
tcccatttttctccaataggttgcaaatgtattggccactttagtaca |
6094714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 44162638 - 44162683
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc |
272 |
Q |
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| T |
44162638 |
ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc |
44162683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 44188758 - 44188803
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc |
272 |
Q |
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| T |
44188758 |
ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc |
44188803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 6094904 - 6094960
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtctctgct |
283 |
Q |
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| T |
6094904 |
ttgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgct |
6094960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 32727608 - 32727697
Alignment:
| Q |
23 |
aacaatcttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtaca |
112 |
Q |
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| T |
32727608 |
aacaattttgcttggatttgctcctttgattgtgaactataatcccgtttttctccaataggctgcaaatgtatttgccactttagtaca |
32727697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 32727886 - 32727931
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc |
272 |
Q |
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| T |
32727886 |
ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttc |
32727931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 32718902 - 32718947
Alignment:
| Q |
227 |
ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttc |
272 |
Q |
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| T |
32718902 |
ttgaataaatacttacagcagcttgtaacttgtcaagttccttttc |
32718947 |
T |
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