View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_low_92 (Length: 291)
Name: NF11788_low_92
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_92 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 77 - 291
Target Start/End: Original strand, 1420388 - 1420609
Alignment:
| Q |
77 |
gaagaaactaaacaaa-tatattataaaaccaagctcctctaacacagagtgtatcaaaggaagctaaaggat------atatagaatgatatttttatt |
169 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1420388 |
gaagaaactaaacaaaatatatcataaaactaagctcctctagcacaaggtgtatcaaaggaagctaatggatctaaaaatatagaatgatatttttatt |
1420487 |
T |
|
| Q |
170 |
gacaattcaaatgaggaaatcattacatattatcattatatataaaattgtagagaacaattttgacgtgtgtttatgattttaaaaatgaatttttata |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1420488 |
gacaattaaaatgaggaaatcattacatattatcattatatataaaattgtagagaacaattttgacgtgtgtttatgattttaaaaatgaatttttata |
1420587 |
T |
|
| Q |
270 |
tatattcgatgctataaatata |
291 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1420588 |
tatattcgatgctataaatata |
1420609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 23236385 - 23236313
Alignment:
| Q |
77 |
gaagaaactaaacaaa-tatattataaaaccaagctcctctaacacagagtgtatcaaaggaagctaaaggat |
148 |
Q |
| |
|
|||||| ||||||||| ||||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
23236385 |
gaagaagctaaacaaaatatattaaaaaatcaagctcctctaacacaaggtgtaccaaagaaagctaaaggat |
23236313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 1416944 - 1416983
Alignment:
| Q |
19 |
atcctataatcattattattaacaaaaatccattttttaa |
58 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1416944 |
atcctatgatcattattattaacaaaaatccattttttaa |
1416983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University