View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_93 (Length: 287)
Name: NF11788_low_93
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 47218525 - 47218289
Alignment:
| Q |
34 |
atttaatgggttagatgaaaacctcttttacaaaacaacatgtggcccgcataatctggttaatcccaccacctcatttatggcttacataggagcggtg |
133 |
Q |
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| T |
47218525 |
atttaatgggttagatgaaaacctcttttacaaaacaacatgtggcccgcataatctggttaatctcaccacctcatttatggcttacataggagcggtg |
47218426 |
T |
|
| Q |
134 |
ggtctaagta------ataagtgctgctactttgcttttgcaatactactggcattcgagttgaaaagagtaatgtcatggacacattattttcaacgtt |
227 |
Q |
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| T |
47218425 |
ggtctaagtaataataataagtgctgctactttgcttttgcaatactactggcattcgagttgaaaatagtaatgtcacggacacactatttttaacatt |
47218326 |
T |
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| Q |
228 |
ttctctaatattaactcttttattggatgagaatagt |
264 |
Q |
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|||| ||| ||| ||||||||||||||||| |||||| |
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| T |
47218325 |
ttctttaacattcactcttttattggatgaaaatagt |
47218289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 47578938 - 47578967
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaattaaat |
30 |
Q |
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| T |
47578938 |
tacaatttgggacggagggagtaattaaat |
47578967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30087747 - 30087715
Alignment:
| Q |
1 |
tacaatttgggacggagggagtaattaaatatt |
33 |
Q |
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| T |
30087747 |
tacaatttgggacggagggagtaattaattatt |
30087715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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