View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_97 (Length: 273)
Name: NF11788_low_97
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 37438771 - 37438539
Alignment:
| Q |
21 |
cactcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaat |
120 |
Q |
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| T |
37438771 |
cactcttttgaaggtgaaagaagaggattatacacttctacttgtatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaat |
37438672 |
T |
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| Q |
121 |
atttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagccaaatatacgccgatgttaccnn |
220 |
Q |
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| T |
37438671 |
atttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagcaaaatatacgccgatgttaccaa |
37438572 |
T |
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| Q |
221 |
nnnnnnttctcaaatatcagcaataaacaattt |
253 |
Q |
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| T |
37438571 |
aagaaattctcaaatatcagcaataaacaattt |
37438539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 606328 - 606512
Alignment:
| Q |
22 |
actcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaata |
121 |
Q |
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| T |
606328 |
actcttttgaatgtgaaggaagaagattatacacctctactcatatcaattggacctatccaccatagcaacaaaacacatgaggatatgcaagaacaca |
606427 |
T |
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| Q |
122 |
-----------tttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaaga |
195 |
Q |
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| T |
606428 |
aacagagatattttcatttcttttggaatcgcctagaccaaaaaagtgatttaatgaactacaaaactttccttgaacaagaaga |
606512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 177640 - 177732
Alignment:
| Q |
24 |
tcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaaga |
116 |
Q |
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| T |
177640 |
tcttttgaatgggaaagaagaggcatatacacctctgctcatatcaattggacctatccaccataacaacaaaaaacttgaggaaatgcaaga |
177732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 116149 - 116055
Alignment:
| Q |
22 |
actcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaaga |
116 |
Q |
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| T |
116149 |
actcttttgaatgtgaaagaggaggcttatacacctctaatcatatctattggacctatccaccataacaacgaaagacttgaggaaatgcaaga |
116055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 116008 - 115942
Alignment:
| Q |
152 |
aaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagccaaatatacgccgatgttacc |
218 |
Q |
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| T |
116008 |
aaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttacc |
115942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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