View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11788_low_98 (Length: 272)
Name: NF11788_low_98
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 36902975 - 36903228
Alignment:
| Q |
1 |
gctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttg |
100 |
Q |
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| T |
36902975 |
gctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttg |
36903074 |
T |
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| Q |
101 |
tcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtagaccagtattagaaggcaatcctgcattcaatgtcttcctctt |
200 |
Q |
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| T |
36903075 |
tcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtagaccagtattagaaggcaatcctgcattcaatgtcttcctctt |
36903174 |
T |
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| Q |
201 |
tgcttcgcatagtggcctttgtttctctttcaccgcactcatcatgttcctttt |
254 |
Q |
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| T |
36903175 |
tgcttcgcttagtggcctttgtttctctttcaccgcactcatcatgttcctttt |
36903228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 36893198 - 36893366
Alignment:
| Q |
29 |
aaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaag |
128 |
Q |
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| T |
36893198 |
aaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaag |
36893297 |
T |
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| Q |
129 |
tgcagtacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
194 |
Q |
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| T |
36893298 |
cgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
36893366 |
T |
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