View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_high_11 (Length: 430)
Name: NF11789_high_11
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 152 - 378
Target Start/End: Original strand, 10698505 - 10698731
Alignment:
| Q |
152 |
ttgtacaccaaactaaaaacttatataataatcaaattaggaattcgcaaaaaacatcaatgagaagtcactttcagaaaaatgtagtttacatagcgtt |
251 |
Q |
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| T |
10698505 |
ttgtacaccaaactaaaaacttatataataatcaaattaggaattcgcaaaaaacatcaatgagaagtcactttctgaaaaatgtagtttacatagcttt |
10698604 |
T |
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| Q |
252 |
aatcctaatttagtttctattctgatgtcaatcaatgaattcatgtgaatgagaatgttggaaagaaagnnnnnnnnnncatgaaacactcattccccat |
351 |
Q |
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| T |
10698605 |
aatcctaatttattttctattctgatgtcaatcaatgaattcatgtgaatgagaatgttggaaagaaagaaaaaaaaaacatgaaacactcattccccat |
10698704 |
T |
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| Q |
352 |
ggtaaaaattattctataaattaccac |
378 |
Q |
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| T |
10698705 |
ggtaaaaatgattctataaattaccac |
10698731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 10698370 - 10698471
Alignment:
| Q |
17 |
tatattttattttagaaaaatgaatcgtttcaaaaacttgtttttgtaaccaaaaaatttcacattatattggatatattaatgtttgagagagtagctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10698370 |
tatattttattttagaaaaatgaatcgtttcaaaaaattgtttttgttagtaatcaatttcacattatattggatatattaatgtttgagagagtagctc |
10698469 |
T |
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| Q |
117 |
tc |
118 |
Q |
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| T |
10698470 |
tc |
10698471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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