View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11789_high_5 (Length: 554)
Name: NF11789_high_5
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 3088531 - 3089065
Alignment:
| Q |
7 |
gcacgttggattcacctcagacaaaggtggaaacacgattgatctacgctggtatcggcacaaatctaatctgcatcatgtaagcaaaaaatttgttact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3088531 |
gcacgttggattcacctcagacaaaggtggaaacacgattgatctacgctggtatcggcacaaatctaatctgcatcatgtaagcaaaaaatatgttact |
3088630 |
T |
|
| Q |
107 |
agcatacggatttacaaaacaactttgttaagcgaattttagattcttcatgctgaaggaaattgagtcagatataatttcttcatgtgacatttttgtt |
206 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088631 |
agcatacagatttacaaaacaacttcgttaagcgaattttagattcttcatgctgaaggaaattgagtcagatataatttcttcatgtgacatttttgtt |
3088730 |
T |
|
| Q |
207 |
tttcttgtttatgcttataaggtgtgggacagagaaattattctcacagcattagcagattactatgacaaagatgtgacactcctcctccaagacattg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088731 |
tttcttgtttatgcttataaggtgtgggacagagaaattattctcacagcattagcagattactatgacaaagatgtgacactcctcctccaagacattg |
3088830 |
T |
|
| Q |
307 |
agaaaaactataccaatgtaagtaacattatttaaatttttctgtcactcttcctagattgaatgaacacatggattttttattggctccaaataaaatc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088831 |
agaaaaactataccaatgtaagtaacattatttaaatttttctgtcactcttcctagattgaatgaacacatggattttttattggctccaaataaaatc |
3088930 |
T |
|
| Q |
407 |
aacttattatttcttgtatgcagggaatctggtcagatgatgttgcttcttgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088931 |
aacttattatttcttgtatgcagggaatctggtcagatgatgttgcttcttgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttt |
3089030 |
T |
|
| Q |
507 |
tctcttccactttcaatttcagcaatctctttttg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089031 |
tctcttccactttcaatttcagcaatctctttttg |
3089065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University