View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_high_6 (Length: 525)
Name: NF11789_high_6
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 517
Target Start/End: Complemental strand, 25311109 - 25310609
Alignment:
| Q |
19 |
actacctttatgcttccagaatatgcattgtagaaatggagcacagaacatgcccgaatgagacacaaaatatacacagaaagaaagggtcatgtcatga |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
25311109 |
actacctttatgcttccagattatgcattgtagaaatggagcacaaaacatgcccaaatgagacacaaaatatagacagaaagaaaggttcatgtcatga |
25311010 |
T |
|
| Q |
119 |
cattccgggcttgtgaatacatttaaagtgtattttaaaactacatgtaccatttctttagaaccaacctccttttctaaaaccagtgataatccaccag |
218 |
Q |
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|||| |||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25311009 |
cattgcgggcttgtgaagacatttaaagtgtaatttaaaactacatgcaccattcctttagaaccaacctccttttctaaaaccagtgataatccaccag |
25310910 |
T |
|
| Q |
219 |
ttataataactttagacccttaatgctattactagagaaggaaatctaattaattttccatgcaacaaactgaaaaagttattcatggcaacaagtattt |
318 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
25310909 |
ttacaataactttagacccttaatgctattactagagaaggaaatctaattaattttccatgcaacaaactgaaaaagttattcatgacaacaaatattt |
25310810 |
T |
|
| Q |
319 |
aagagatcttttcttggtgagactatccttttcttattgcaatgatgaaacatatccgacacattttcagatg--acagccctgtgttatatccacaaag |
416 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||| |
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| T |
25310809 |
aagagatcttttcttgttgagactatccttttcttattgcaatgatgaaacatatccgacacattttcagatgatacagcccagtgatatatccacgaag |
25310710 |
T |
|
| Q |
417 |
acagcnnnnnnnnnnnnnnnnnngaggagtatagtatctcatactttttcttcagtgtcatcaggacgggttactagccttgctttgatttcttctctct |
516 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
25310709 |
acagcaaaaaaagaaaagaaaattaggagtatagtatctcatactttttcttcagtgtcatcaggacgagttactagccttgcttttatttcttctgtct |
25310610 |
T |
|
| Q |
517 |
c |
517 |
Q |
| |
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| T |
25310609 |
c |
25310609 |
T |
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