View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_high_9 (Length: 452)
Name: NF11789_high_9
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 8555099 - 8554675
Alignment:
| Q |
15 |
aacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttccaaaataaattcataaattatggaaag |
114 |
Q |
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| T |
8555099 |
aacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttccaaaataaattcataaattatggaaag |
8555000 |
T |
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| Q |
115 |
catactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggatactgaattgact |
214 |
Q |
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| T |
8554999 |
catactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatc-----aatagcattgttggtggatactgaattgact |
8554905 |
T |
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| Q |
215 |
tatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaaca----acttaactattatcataagatatcacatcacatcacaa |
310 |
Q |
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| T |
8554904 |
tatctggatgttgctcccatggtctccagacattatgcaatggtgagtacctaaaacaacttacttaactattatcataagatatcacatcacatcacaa |
8554805 |
T |
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| Q |
311 |
atagtcccctacatcaaagtcttcaacattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcctc |
410 |
Q |
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| T |
8554804 |
atagtcccctacatcaaagtctgcaaaattatagtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcctc |
8554705 |
T |
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| Q |
411 |
cttgtcaggagaaccaaattctgatgtcca |
440 |
Q |
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| T |
8554704 |
tttgtcaggagaaccaaattctgaagtcca |
8554675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 103 - 293
Target Start/End: Complemental strand, 8559533 - 8559349
Alignment:
| Q |
103 |
aattatggaaagcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggat |
202 |
Q |
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| T |
8559533 |
aattatgggaagcagacaaaccgccaatagcttcaatgaatgtaatggcacaacacgatcatcatgatcagctgt-----caatagcattgttgatgggt |
8559439 |
T |
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| Q |
203 |
actgaattgacttatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaacaacttaactattatcataagat |
293 |
Q |
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| T |
8559438 |
actgaatcgacttatctggatgctgttcccatggtctccggacattatgcaatggtgagtacctgaaacaccat-agtattatcataagat |
8559349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 8559263 - 8559166
Alignment:
| Q |
343 |
agtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcctccttgtcaggagaaccaaattctgatgtcca |
440 |
Q |
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||||||| |||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | | ||||| ||||| ||||| |
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| T |
8559263 |
agtttcatcttactatttaacgataggtttaacgaaactcacttgattagccaatgaaattcttcttccttgtcagaacagccaaaatctgaggtcca |
8559166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 8559609 - 8559561
Alignment:
| Q |
56 |
atttggaatacaagttaaaag-tttgcagcttccaaaataaattcataa |
103 |
Q |
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| T |
8559609 |
atttggaatacaagttaaaagttttgaagcttgcaaattaaattcataa |
8559561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 53740427 - 53740281
Alignment:
| Q |
118 |
actaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggatactgaattgacttat |
217 |
Q |
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| T |
53740427 |
actaaccgccaatagcttcaatgagtgtagtggcacaactcgatcatcatgatctgccgttaa--caa---catagttgatgggtattgaattgacttgt |
53740333 |
T |
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| Q |
218 |
ctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaa |
269 |
Q |
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| T |
53740332 |
caggatgctgttcccaaggtcgccggacattatgcaatggtgagtacctaaa |
53740281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 53739171 - 53739135
Alignment:
| Q |
377 |
aaactcacttgattagccaatgaaattcttcctcctt |
413 |
Q |
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| T |
53739171 |
aaactcacttgattagccaatgaaactcttcctcctt |
53739135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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