View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11789_low_1 (Length: 957)

Name: NF11789_low_1
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11789_low_1
NF11789_low_1
[»] chr3 (8 HSPs)
chr3 (18-473)||(47565908-47566363)
chr3 (615-849)||(47565676-47565910)
chr3 (777-849)||(53682982-53683054)
chr3 (777-848)||(34974803-34974874)
chr3 (776-848)||(31125752-31125824)
chr3 (777-849)||(38930470-38930542)
chr3 (777-848)||(53107639-53107710)
chr3 (786-823)||(32170503-32170540)
[»] chr2 (7 HSPs)
chr2 (763-848)||(6796484-6796568)
chr2 (765-849)||(7181553-7181636)
chr2 (777-849)||(13326995-13327067)
chr2 (776-848)||(35926125-35926197)
chr2 (777-848)||(6801054-6801125)
chr2 (777-848)||(39990580-39990651)
chr2 (776-848)||(35920134-35920206)
[»] chr1 (21 HSPs)
chr1 (772-848)||(5126499-5126575)
chr1 (774-848)||(48033100-48033174)
chr1 (775-849)||(48034709-48034783)
chr1 (775-848)||(48035756-48035829)
chr1 (775-848)||(48055941-48056014)
chr1 (776-848)||(48041323-48041395)
chr1 (776-848)||(48050608-48050680)
chr1 (775-848)||(29812825-29812898)
chr1 (775-848)||(48040171-48040244)
chr1 (775-848)||(48042833-48042906)
chr1 (776-848)||(48049406-48049478)
chr1 (781-848)||(48036725-48036792)
chr1 (775-848)||(48053125-48053198)
chr1 (777-849)||(48042225-48042297)
chr1 (777-848)||(39972786-39972857)
chr1 (770-848)||(22908317-22908395)
chr1 (780-849)||(48050016-48050085)
chr1 (775-848)||(48054677-48054750)
chr1 (775-835)||(29813662-29813722)
chr1 (775-848)||(48048640-48048714)
chr1 (787-846)||(48054322-48054381)
[»] chr4 (3 HSPs)
chr4 (775-849)||(49152534-49152608)
chr4 (777-848)||(38393563-38393634)
chr4 (782-838)||(26929299-26929355)
[»] chr6 (7 HSPs)
chr6 (777-848)||(992442-992513)
chr6 (771-848)||(10754597-10754674)
chr6 (771-848)||(10750280-10750357)
chr6 (776-831)||(32678635-32678690)
chr6 (777-849)||(18613088-18613160)
chr6 (776-848)||(10748684-10748756)
chr6 (368-431)||(12264313-12264377)
[»] chr7 (4 HSPs)
chr7 (777-849)||(23780469-23780541)
chr7 (777-848)||(43920607-43920678)
chr7 (777-849)||(40706106-40706178)
chr7 (782-838)||(46064798-46064854)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 47566363 - 47565908
Alignment:
Q  18 agtatggtggtcattggtgtgcttactggttacaagctgatcgagtttacgttaaaataggtggtttgatatttaactttacactctagagcataaaaga 117  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47566363 agtatggtggtcattggtgtgcttcctagttacaagctgatcgagtttacgttaaaataggtggtttgatatttaactttacactctagagcataaaaga 47566264  T
Q  118 gtagtgatttctgtgttcttaaacattctattattccattctttttaaataacccaatcgcaaatgatcaactaaatgaggtgtataatagagtgttgat 217  Q
    |||||||||| ||||||||||||||||||             |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  47566263 gtagtgatttatgtgttcttaaacattct-------------ttttaaataacccaatcgcaaat---caactaaatgaggtgtataatagagtgttgat 47566180  T
Q  218 gtttagatgttccagtcaaataactgatccataataccctgttgagaagtcaaagcta-----------------cgctgccaaagagaacnnnnnnnct 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                 ||||||||||||||||       ||    
T  47566179 gtttagatgttccagtcaaataactgatccataataccctcttgagaagtcaaagctaaaccgaccgtggatgcacgctgccaaagagaacaaaaaa-ct 47566081  T
Q  301 aacaatcaaaaaacaagtgttctcctaggaaccgcatctggccacacaactgagcatcaatagtaacaataccacgtcgatgtaaattatccttgtaggc 400  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47566080 aacaatccaaaaacaagtgttctcctaggaaccgcatctggccacacagctgagcatcaatagtaacaatatcacgtcgatgtaaattatccttgtaggc 47565981  T
Q  401 aatctattttgaataagcctccaagcaaacacatttaatttcagcattcacatatgagctagaactttgcgaa 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47565980 aatctattttgaataagcctccaagcaaacacatttaatttcagcattgacatatgagctagaactttgcgaa 47565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 615 - 849
Target Start/End: Complemental strand, 47565910 - 47565676
Alignment:
Q  615 gaaaaccacgtaccctgaattatcgacaataattcactgatcgcagcagcactccagttattacagcttgtttttaataaaatttgtcatagttcaaact 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||| |||||||||    
T  47565910 gaaaaccacgtaccctgaattatcgacaataattcactgatcgcagcagcactccatttattacagctcgtgtttaattaaatttgtcatggttcaaact 47565811  T
Q  715 tcgagttttaagtttataaagtttgtattatatataatttcggaacactcatatcacaaacagggcatttggtctagtggtatgattctcgctttgggtg 814  Q
    || ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565810 tccagttttaagtttataaagtttgtattatatatattttcggaacaatcacatcacaaacagggcatttggtctagtggtatgattctcgctttgggtg 47565711  T
Q  815 cgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||||||    
T  47565710 cgagaggtccggagttcgattctccgaatgcccca 47565676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 777 - 849
Target Start/End: Original strand, 53682982 - 53683054
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53682982 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 53683054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 777 - 848
Target Start/End: Original strand, 34974803 - 34974874
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974803 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 34974874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 31125752 - 31125824
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  31125752 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 31125824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 777 - 849
Target Start/End: Complemental strand, 38930542 - 38930470
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  38930542 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccca 38930470  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Original strand, 53107639 - 53107710
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  53107639 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 53107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 823
Target Start/End: Original strand, 32170503 - 32170540
Alignment:
Q  786 gtctagtggtatgattctcgctttgggtgcgagaggtc 823  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtc 32170540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 8e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 6796484 - 6796568
Alignment:
Q  763 tcatatcacaaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796484 tcatatcacaaa-agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 6796568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 765 - 849
Target Start/End: Original strand, 7181553 - 7181636
Alignment:
Q  765 atatcacaaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181553 atatcacaaa-agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 7181636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 777 - 849
Target Start/End: Complemental strand, 13327067 - 13326995
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13327067 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 13326995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 776 - 848
Target Start/End: Complemental strand, 35926197 - 35926125
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  35926197 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 35926125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Complemental strand, 6801125 - 6801054
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  6801125 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 6801054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Original strand, 39990580 - 39990651
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39990580 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39990651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 848
Target Start/End: Complemental strand, 35920206 - 35920134
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||  ||||| |||||| |||||||||    
T  35920206 agggcatctggtctagtggtatgattcttgcttagggtgcgagaggtcccaagttcaattctcggaatgcccc 35920134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 772 - 848
Target Start/End: Original strand, 5126499 - 5126575
Alignment:
Q  772 aaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126499 aaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 5126575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 774 - 848
Target Start/End: Original strand, 48033100 - 48033174
Alignment:
Q  774 acagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033100 acagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48033174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 775 - 849
Target Start/End: Original strand, 48034709 - 48034783
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034709 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 48034783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48035756 - 48035829
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48035756 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48035829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48055941 - 48056014
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48055941 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 48041323 - 48041395
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041323 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48041395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 48050608 - 48050680
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050608 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48050680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 775 - 848
Target Start/End: Complemental strand, 29812898 - 29812825
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29812898 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 29812825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48040171 - 48040244
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48040171 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48040244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48042833 - 48042906
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48042833 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctctgaatgcccc 48042906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 48049406 - 48049478
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48049406 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48049478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 781 - 848
Target Start/End: Original strand, 48036725 - 48036792
Alignment:
Q  781 atttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  48036725 atttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctccgaatgcccc 48036792  T

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Target: chr1; HSP #13
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48053125 - 48053198
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  48053125 cagggcatttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcggaatgcccc 48053198  T

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Target: chr1; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 777 - 849
Target Start/End: Original strand, 48042225 - 48042297
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||    
T  48042225 gggcatttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcggaatgcccca 48042297  T

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Target: chr1; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Complemental strand, 39972857 - 39972786
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39972857 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39972786  T

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Target: chr1; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 770 - 848
Target Start/End: Original strand, 22908317 - 22908395
Alignment:
Q  770 acaaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||| |||||||||    
T  22908317 acaaaaagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcggaatgcccc 22908395  T

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Target: chr1; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 780 - 849
Target Start/End: Original strand, 48050016 - 48050085
Alignment:
Q  780 catttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  48050016 catttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcggaatgcccca 48050085  T

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Target: chr1; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48054677 - 48054750
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||| |||||||||    
T  48054677 cagggcatttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcggaatgcccc 48054750  T

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Target: chr1; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 775 - 835
Target Start/End: Complemental strand, 29813722 - 29813662
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgatt 835  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  29813722 cagggcatttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatt 29813662  T

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Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 775 - 848
Target Start/End: Original strand, 48048640 - 48048714
Alignment:
Q  775 cagggcatttggtc-tagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||  |||| ||||||| |||||||||    
T  48048640 cagggcatttggtcctagtggtatcattctcgctttgggtgcgagaggtcccaagtttgattctcggaatgcccc 48048714  T

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Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 787 - 846
Target Start/End: Original strand, 48054322 - 48054381
Alignment:
Q  787 tctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcc 846  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctcagaatgcc 48054381  T

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Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 775 - 849
Target Start/End: Complemental strand, 49152608 - 49152534
Alignment:
Q  775 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152608 cagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 49152534  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Complemental strand, 38393634 - 38393563
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  38393634 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38393563  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 26929355 - 26929299
Alignment:
Q  782 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 838  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  26929355 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 26929299  T

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Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 777 - 848
Target Start/End: Complemental strand, 992513 - 992442
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  992513 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 992442  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 771 - 848
Target Start/End: Complemental strand, 10754674 - 10754597
Alignment:
Q  771 caaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  10754674 caaaaagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 10754597  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 771 - 848
Target Start/End: Complemental strand, 10750357 - 10750280
Alignment:
Q  771 caaacagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||| |||||||||| |||||||||||||||||||||| |||||| |||||||| |||||| |||||| |||||||||    
T  10750357 caaaaagggcatttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcggaatgcccc 10750280  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 831
Target Start/End: Complemental strand, 32678690 - 32678635
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttc 831  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32678690 agggcatttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc 32678635  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 777 - 849
Target Start/End: Original strand, 18613088 - 18613160
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||  |||||| ||||||||||    
T  18613088 gggcatttgatctagtggtatgattcttgcttagggtgcgagaggtcccgagtttaattctcggaatgcccca 18613160  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 776 - 848
Target Start/End: Complemental strand, 10748756 - 10748684
Alignment:
Q  776 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||| ||||||||||| || ||||| ||||||||  ||| || |||||| |||||||||    
T  10748756 agggcatttggtctagtgatatgattctcgtttagggtgtgagaggtctcgagctcaattctcggaatgcccc 10748684  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 431
Target Start/End: Complemental strand, 12264377 - 12264313
Alignment:
Q  368 aataccacgtcgatgtaaattatc-cttgtaggcaatctattttgaataagcctccaagcaaaca 431  Q
    |||||||||||||||||||||||| ||||| || ||||||||   |||| |||||||||||||||    
T  12264377 aataccacgtcgatgtaaattatcacttgtgggaaatctattactaatatgcctccaagcaaaca 12264313  T

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Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 777 - 849
Target Start/End: Original strand, 23780469 - 23780541
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  23780469 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccca 23780541  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 848
Target Start/End: Original strand, 43920607 - 43920678
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 848  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  43920607 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 43920678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 777 - 849
Target Start/End: Original strand, 40706106 - 40706178
Alignment:
Q  777 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccca 849  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||| |||||| |||||| ||||||||||    
T  40706106 gggcatttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcggaatgcccca 40706178  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 46064854 - 46064798
Alignment:
Q  782 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 838  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  46064854 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 46064798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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