View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11789_low_10 (Length: 430)

Name: NF11789_low_10
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11789_low_10
NF11789_low_10
[»] chr1 (3 HSPs)
chr1 (19-416)||(12636942-12637339)
chr1 (19-416)||(15885621-15886021)
chr1 (20-416)||(12609847-12610246)
[»] scaffold0059 (1 HSPs)
scaffold0059 (23-416)||(62098-62494)
[»] chr3 (15 HSPs)
chr3 (23-415)||(23038986-23039381)
chr3 (35-415)||(23145877-23146260)
chr3 (36-223)||(23036128-23036315)
chr3 (23-274)||(23139991-23140242)
chr3 (30-217)||(23148710-23148897)
chr3 (24-274)||(23017008-23017258)
chr3 (47-221)||(23024241-23024415)
chr3 (60-268)||(22971933-22972141)
chr3 (30-274)||(23032666-23032895)
chr3 (58-268)||(22946384-22946594)
chr3 (19-274)||(22941378-22941633)
chr3 (19-274)||(22831776-22832031)
chr3 (72-158)||(22986271-22986357)
chr3 (19-121)||(22916831-22916933)
chr3 (180-268)||(22916681-22916769)
[»] chr6 (2 HSPs)
chr6 (35-415)||(21779770-21780153)
chr6 (59-208)||(12438285-12438434)
[»] scaffold0554 (1 HSPs)
scaffold0554 (24-223)||(6609-6808)
[»] chr8 (1 HSPs)
chr8 (19-274)||(5594034-5594289)
[»] chr5 (2 HSPs)
chr5 (50-119)||(7154492-7154561)
chr5 (165-217)||(41465802-41465854)
[»] chr2 (1 HSPs)
chr2 (52-110)||(2433650-2433708)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 12636942 - 12637339
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttccttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12636942 acaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttccttt 12637041  T
Q  119 gtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637042 gtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacc 12637141  T
Q  219 ttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637142 ttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttca 12637241  T
Q  319 ctactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637242 ctactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 12637339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 15886021 - 15885621
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttccttt 118  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  15886021 acaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaaggaatgtactcaaaattattcccttt 15885922  T
Q  119 gtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacc 218  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| | ||||||||| |||||||||    
T  15885921 atagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcattgactatcacc 15885822  T
Q  219 ttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctt 315  Q
    || ||||||| |||||||||||| || ||||| |||||||||||| ||||||||||   |||||||||||||| |||||||||||||||||  |||||||    
T  15885821 ttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctt 15885722  T
Q  316 tcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcat 415  Q
    |||| ||| ||||||||||   ||| ||||| |||||||| |||||||||  ||||||  ||||||| |||| ||| ||||||| |||||||||||||||    
T  15885721 tcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcat 15885622  T
Q  416 c 416  Q
    |    
T  15885621 c 15885621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 12609847 - 12610246
Alignment:
Q  20 caatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttg 119  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  12609847 caatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttg 12609946  T
Q  120 tagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacct 219  Q
    ||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||    
T  12609947 tagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcacct 12610046  T
Q  220 tacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctcttt 316  Q
    | ||||||  ||||||| ||||||| ||||| |||||||||||||||||||||||   |||||||||||||  |||||| ||||||||||  ||||||||    
T  12610047 tgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctcttt 12610146  T
Q  317 cactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 416  Q
    ||| ||| |||| |||||   ||||||||||||| | |||||  |||||  ||||||| |||||||||| | ||| || |||| ||||||||||||||||    
T  12610147 cacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatc 12610246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 23 - 416
Target Start/End: Original strand, 62098 - 62494
Alignment:
Q  23 tgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtag 122  Q
    ||||||||||| ||||| | | |||||||||||| |  ||||||||||||||||| |||| |||||||||||||||||||| |||||||| || ||||||    
T  62098 tgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgtactcgaaattattcccgttgtag 62197  T
Q  123 tcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttac 222  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| || |||| ||||||||| ||||||| |||      
T  62198 tcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcattaactatcagctttg 62297  T
Q  223 ttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcac 319  Q
    ||||   ||||||||||||||| ||||| |||||||||| || |||||||||   ||||||||||| |  ||| ||||||||||| || |||||||||||    
T  62298 ttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcac 62397  T
Q  320 tactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 416  Q
     | | ||||||  |||| ||||||||  ||| |  ||||| ||| |||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  62398 aattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttcatgttgtatatttctctcacttcatcttgtgctttcttcatc 62494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 23038986 - 23039381
Alignment:
Q  23 tgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtag 122  Q
    |||||| |||| ||||| | || |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||    
T  23038986 tgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcataattacttcctttatag 23039085  T
Q  123 tcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttac 222  Q
    ||||| | |||  ||| |||||||||||||| ||| ||||| || ||||||||||| |||||||||||  |||||| ||| ||||| |||||||||||||    
T  23039086 tcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttac 23039185  T
Q  223 ttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcac 319  Q
    | ||    ||||| ||||| || |  || ||||||| ||| | |||||||||    || |||||||| ||||||||||||||||| || || ||||| ||    
T  23039186 tcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgac 23039285  T
Q  320 tactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcat 415  Q
     ||| |||||||||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| |  | |||||| |||| ||| |||||||||||    
T  23039286 aactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcat 23039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 35 - 415
Target Start/End: Original strand, 23145877 - 23146260
Alignment:
Q  35 ctcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagcta 134  Q
    ||||| |||| |||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||| |||||||||  |||     
T  23145877 ctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctg 23145976  T
Q  135 ccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggta 234  Q
     | |||||||||||||||| |||||||||||||||||||||||| |||||||||||  ||| || ||| ||||| |||| ||||||| | ||    ||||    
T  23145977 tcgatgaatctctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggta 23146076  T
Q  235 tatgatacccttcaatttcacatgcttgtccacattctctaagt---aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaa 331  Q
    | ||||| || |  || |||||| |||| | |||||||||  ||   |||||||| | ||||||||||| |||||  || ||||| || ||||| |||||    
T  23146077 tgtgataaccatttatatcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaa 23146176  T
Q  332 atattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcat 415  Q
    ||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| |  | |||||| |||| |||||||||||||||    
T  23146177 ataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcat 23146260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 23036128 - 23036315
Alignment:
Q  36 tcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctac 135  Q
    |||| |||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||| |||      
T  23036128 tcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgt 23036227  T
Q  136 caatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttact 223  Q
    | ||||||||||| |||| ||| |||||||||||||||||||| |||||||||||  |||||| ||| ||||||| | | ||||||||    
T  23036228 cgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttact 23036315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 23139991 - 23140242
Alignment:
Q  23 tgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtag 122  Q
    |||||| | ||||||||||||| ||||||||||| || | |||||||||||||||| ||| ||||||||||||||||||||||||| | | ||||| |||    
T  23139991 tgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatag 23140090  T
Q  123 tcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttac 222  Q
    ||||||| | | || |||||||||||||||| |||  ||||||||||||||||||| |||||||||||  | |||| ||||||||| || | |||||||     
T  23140091 tcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgcattgacgaccaccttag 23140190  T
Q  223 ttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
    | ||   |||||| ||||| || |  || ||||||||||| ||||| |||||    
T  23140191 tcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctct 23140242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 23148710 - 23148897
Alignment:
Q  30 gccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatag 129  Q
    |||| ||||| |||| ||||||||||| || | |||||||||||||||||||| |||||||||||||||||||| || ||| | ||||| |||||||||     
T  23148710 gccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatat 23148809  T
Q  130 agctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 217  Q
     |||  |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||  |||||| ||| ||||| | ||||||    
T  23148810 cgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcac 23148897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 23017008 - 23017258
Alignment:
Q  24 gcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagt 123  Q
    ||||| ||||||||||||||| ||||||| |||||  | || |||||||||||||||||  |||||||||||||||| || || ||| | ||||| ||||    
T  23017008 gcaagggccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactccctttatagt 23017107  T
Q  124 caatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttact 223  Q
    |||||  | |  |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||  | |||| ||| ||||| | |||||||||| |    
T  23017108 caataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagt 23017207  T
Q  224 tttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
     ||  ||||||| ||||| || |  || ||||||||||  |||||||||||    
T  23017208 cttaactggtatgtgataaccatgtatctcacatgctttaccacattctct 23017258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 23024241 - 23024415
Alignment:
Q  47 caaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctc 146  Q
    |||||||||| || | ||||| |||||||||| ||| |||||||||||||| |||||||| ||| | ||||| |||||||||   ||| | |||||||||    
T  23024241 caaaccaaatatgctccctggacatattcttcgtcccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctc 23024340  T
Q  147 tctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacctta 221  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||  |||||| ||| ||||| ||||||||||||    
T  23024341 tctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcattgactatcacctta 23024415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 22971933 - 22972141
Alignment:
Q  60 atgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacc 159  Q
    |||||||| || ||||||||||| |||||||| |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| ||||     
T  22971933 atgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaact 22972032  T
Q  160 tctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgc 259  Q
    | ||||| |||||||| || |||||||| || ||||||| ||| ||||| | ||||||| ||||||||  |||||| ||||| || ||||| ||||| ||    
T  22972033 tatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagc 22972132  T
Q  260 ttgtccaca 268  Q
    |||||||||    
T  22972133 ttgtccaca 22972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 23032666 - 23032895
Alignment:
Q  30 gccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatag 129  Q
    |||| ||||| |||| |||||||||||||  | |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||    
T  23032666 gccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatag 23032765  T
Q  130 agctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggc 229  Q
     |||  | ||||||               |||||||||||||||||||| |||||||||||  |||||| ||| ||||| |||||||||||||||||       
T  23032766 cgctgtcgatgaat---------------ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaat 23032850  T
Q  230 tggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
    |||||| ||||| || |  || ||||||||||| || ||||||||    
T  23032851 tggtatgtgataaccatttatctcacatgcttgaccgcattctct 23032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 268
Target Start/End: Original strand, 22946384 - 22946594
Alignment:
Q  58 tgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaa 157  Q
    ||||||| || || ||||| ||||| |||||||| |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| |||    
T  22946384 tgatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaa 22946483  T
Q  158 cctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacat 257  Q
    | | ||||| |||||||| || |||||||| || ||||||| ||| ||||| | ||||||| |||| |||  |||||| ||||| || ||||| ||||||    
T  22946484 cttatctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacat 22946583  T
Q  258 gcttgtccaca 268  Q
    |||||| ||||    
T  22946584 gcttgtgcaca 22946594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 22941633 - 22941378
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttccttt 118  Q
    ||||||||||||   |||||||||| | |||||||||||| |  || || || ||||||||||| |||||||| |||||| |||||||||||||||| ||    
T  22941633 acaatgcaagtgggtactcaacattgaccaaaccaaatgttactcccggacacattcttcttccagcaccaaatggaatgaactcaaaattatttccctt 22941534  T
Q  119 gtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcacc 218  Q
     || || | | | ||  |||| || || || |||| ||| |||||||| |||  ||| |  ||||||||||| ||||| | ||| ||||| ||||||||     
T  22941533 ataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcact 22941434  T
Q  219 ttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
    || |||||    ||||||| |||||| |  ||||||||||||||||||||||||||    
T  22941433 ttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctct 22941378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 22831776 - 22832031
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtga-tgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctt 117  Q
    ||||||||||||   |||||||||| | |||||||||||||| |||| ||  | |||||||| || ||||||||||||||| ||||||||||||| || |    
T  22831776 acaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccagcaccaaaaggaatgaactcaaaattattaccct 22831874  T
Q  118 tgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 217  Q
    | ||||| | | | ||| |||||||||| || |||| ||| || ||||| ||   ||| |  ||||||||||| ||||| | ||| ||||| ||||||||    
T  22831875 tatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttggatctcttccaatagcccaagcattcactatcac 22831974  T
Q  218 cttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
     || |||||    ||||||| |||||| |  || |||||||||| ||||||||||||    
T  22831975 tttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctct 22832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 22986271 - 22986357
Alignment:
Q  72 attcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac 158  Q
    ||||| ||||| |||||||| |||||||||||||||||| |||||||| | |||||||| ||| |||| || ||||| |||| ||||    
T  22986271 attctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaac 22986357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 22916933 - 22916831
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttccttt 118  Q
    ||||||||||||  ||||||| ||| | ||| ||||||||||  ||||| || |||||||| ||    ||||| |||||| ||||||||||||| |||||    
T  22916933 acaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattcttctgccactgccaaacggaatgaactcaaaattattaccttt 22916834  T
Q  119 gta 121  Q
    |||    
T  22916833 gta 22916831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 22916769 - 22916681
Alignment:
Q  180 tttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 268  Q
    ||||||||||| ||||| | ||| ||||| |||||||| || |||||   |||||||  |||||| |  ||||||||||||||||||||    
T  22916769 tttggatctcttccaatggcccaagcattcactatcactttgcttttaaatggtataccatacccatttatttcacatgcttgtccaca 22916681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 415
Target Start/End: Original strand, 21779770 - 21780153
Alignment:
Q  35 ctcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagcta 134  Q
    ||||| |||| |||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||| | |||||  ||||||||  ||||    
T  21779770 ctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgcta 21779869  T
Q  135 ccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggta 234  Q
     | |||||||||||||||| |||| ||||||||||||||||||| |||||||||||  |||||| ||| ||||| | |||||||||| | ||    || |    
T  21779870 tcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaa 21779969  T
Q  235 tatgatacccttcaatttcacatgcttgtccacattctctaagt---aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaa 331  Q
    | || || || |  || ||||||||||| | |||||||||  ||   |||||||| | ||||||||||| |||||  || ||||| || ||| | |||||    
T  21779970 tgtggtaaccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaa 21780069  T
Q  332 atattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcat 415  Q
    ||| | ||||||||| ||  | |||||| ||||   ||||||| | ||||| | || ||||||||||| |||||||||||||||    
T  21780070 ataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcat 21780153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 12438285 - 12438434
Alignment:
Q  59 gatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac 158  Q
    |||||| || || ||||||||||| ||||||||||| ||  |||| ||||||   |||||||| ||||| |  | | |||| |||||||| |||| ||||    
T  12438285 gatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggattaaac 12438384  T
Q  159 ctctctggttcagtccagtactttggatctctaccaattgtccatgcatt 208  Q
     | |||  |||| |||| |||||||| ||||| ||||||| |||||||||    
T  12438385 ttttctccttcattccaatactttgggtctcttccaattgcccatgcatt 12438434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 6808 - 6609
Alignment:
Q  24 gcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagt 123  Q
    ||||| |||| |||||||||| ||||||||||| |  | |||||||| ||||||||||| |||||||||||||||||||||||||||   ||||| ||||    
T  6808 gcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagt 6709  T
Q  124 caatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttact 223  Q
    |||||| |||  || ||||||||||||||| |||||||||||||||||||||| | |||||||||||  |||||| ||| ||||| | ||||||||||||    
T  6708 caatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttact 6609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 5594289 - 5594034
Alignment:
Q  19 acaatgcaagtgccaactcaacatttatcaaaccaaatgtga-tgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctt 117  Q
    ||||||||||||   |||||||||| | |||||||||||||| |||| ||  | |||||||| || ||||||||||||||| ||||||||||||| || |    
T  5594289 acaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccagcaccaaaaggaatgaactcaaaattattaccct 5594191  T
Q  118 tgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 217  Q
    | ||||| | | | ||| |||||||||| || |||| ||| || ||||| ||   ||| |  ||||||||||| ||||| | ||| ||||| ||||||||    
T  5594190 tatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttggatctcttccaatagcccaagcattcactatcac 5594091  T
Q  218 cttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 274  Q
     || |||||    ||||||| |||||| |  || |||||||||| ||||||||||||    
T  5594090 tttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctct 5594034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 7154561 - 7154492
Alignment:
Q  50 accaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttg 119  Q
    ||||||||  |||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  7154561 accaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttg 7154492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 41465854 - 41465802
Alignment:
Q  165 ggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 217  Q
    |||||| |||| |||||||||||||| ||||| | ||||||||||||||||||    
T  41465854 ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 41465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 2433708 - 2433650
Alignment:
Q  52 caaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaatta 110  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaatta 2433650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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