View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_low_14 (Length: 285)
Name: NF11789_low_14
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3088442 - 3088167
Alignment:
| Q |
1 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnn-aacaaaatctc |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
3088442 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtattttttttttttaacaaaatctc |
3088343 |
T |
|
| Q |
100 |
cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccctc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088342 |
cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccctc |
3088243 |
T |
|
| Q |
200 |
tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatg |
275 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3088242 |
tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatg |
3088167 |
T |
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