View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11789_low_17 (Length: 237)

Name: NF11789_low_17
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11789_low_17
NF11789_low_17
[»] chr1 (4 HSPs)
chr1 (1-221)||(3010669-3010898)
chr1 (21-149)||(3019875-3020014)
chr1 (21-77)||(3021881-3021937)
chr1 (153-217)||(3020138-3020202)
[»] chr2 (1 HSPs)
chr2 (21-77)||(27139947-27140003)
[»] chr7 (1 HSPs)
chr7 (21-71)||(23580817-23580867)
[»] chr4 (1 HSPs)
chr4 (21-70)||(18912266-18912315)
[»] chr8 (1 HSPs)
chr8 (21-77)||(14601308-14601364)
[»] chr3 (1 HSPs)
chr3 (21-77)||(44658379-44658435)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3010669 - 3010898
Alignment:
Q  1 atttacccagttcggacaagtttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagcttttcgata---------agatatcac 91  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||         |||||||||    
T  3010669 atttacccagttcggacaagtttcaagtcgctcaaattcacaatatatcctaatagaaaacaataaagaaagctttacgatactttctataagatatcac 3010768  T
Q  92 tgctcaaggtgtttgtgacgtatttcccaaagaccatcaacccgaaaattatcaaagacctacgaaaaatcgcgcagtgattttcctagatcgtgccacg 191  Q
    | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3010769 tactcaaggtgtttgtgaagtatttcccaaagaccatcaacccaaaaattatcaaagacctacgaaaaatcgcgcagtgattttcctaaatcgtgccacg 3010868  T
Q  192 attgaagctcatacacagtatagtatattg 221  Q
    ||||||||||||||||||||||||||||||    
T  3010869 attgaagctcatacacagtatagtatattg 3010898  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 3019875 - 3020014
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagcttttcgata-----------agatatcactgctcaaggtgtttgtga 109  Q
    ||||||||| |||||||||| |||  ||||| |||||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||    
T  3019875 tttcaagtcactcaaacccaaaatgaatcctgatagaaaacaataaagaaagtttttcgatatttcaataatgagatatcactactcaaggtgtttgtga 3019974  T
Q  110 cgtatttcccaaagaccatcaacccgaaaattatcaaaga 149  Q
     || || ||| |||||||| || || ||||||||||||||    
T  3019975 agtgttccccgaagaccataaatcctaaaattatcaaaga 3020014  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 3021881 - 3021937
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 77  Q
    ||||||||| ||||||||||||||  || |||||||||||||||||| |||| ||||    
T  3021881 tttcaagtccctcaaacccacaatgaatgctaatagaaaacaataaaaaaagttttt 3021937  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 3020138 - 3020202
Alignment:
Q  153 acgaaaaatcgcgcagtgattttcctagatcgtgccacgattgaagctcatacacagtatagtat 217  Q
    ||||||||||||||  |||||| | |||||||||| ||||||| ||||||| |||| ||| ||||    
T  3020138 acgaaaaatcgcgctatgatttgcttagatcgtgctacgattggagctcatgcacaatattgtat 3020202  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 27139947 - 27140003
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 77  Q
    ||||||||| ||  |||||| |||  |||||||||||||||||||||||||||||||    
T  27139947 tttcaagtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagctttt 27140003  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 23580867 - 23580817
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaa 71  Q
    ||||||||| ||||||||||||||  ||| ||| |||||||||||||||||    
T  23580867 tttcaagtcactcaaacccacaatggatcataagagaaaacaataaagaaa 23580817  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 18912315 - 18912266
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaa 70  Q
    ||||||||| ||||||||||||||  ||||||| |||||| |||||||||    
T  18912315 tttcaagtcactcaaacccacaatgaatcctaagagaaaataataaagaa 18912266  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 14601308 - 14601364
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 77  Q
    ||||||||| ||||||| ||| ||  ||||||  |||||||||||||||||||||||    
T  14601308 tttcaagtcactcaaacgcacgatgaatcctatgagaaaacaataaagaaagctttt 14601364  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 44658435 - 44658379
Alignment:
Q  21 tttcaagtcgctcaaacccacaatatatcctaatagaaaacaataaagaaagctttt 77  Q
    ||||||||| ||||||||||||||  |||| || |||||| ||||||||||| ||||    
T  44658435 tttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaagatttt 44658379  T

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