View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11789_low_2 (Length: 763)
Name: NF11789_low_2
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 7801706 - 7801332
Alignment:
| Q |
20 |
cacccctcctttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801706 |
cacccctcctttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacag |
7801607 |
T |
|
| Q |
120 |
agatcctgaggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaatacaagggatgcaaccggttccgtcgtcgatagcgaaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801606 |
agatcctgaggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaatacaagggatgcaaccggttccgtcgtcgatagcgaaac |
7801507 |
T |
|
| Q |
220 |
ggaggaatttgaagggtttgtggtcgcggaggattatggttcctacggtttcggcgcgtgtgatggggatagagttgcgggtgaaggagtggtttgggga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801506 |
ggaggaatttgaagggtttgtggtcgcggagggttatggttcctacggtttcagcgcgtgtgatggggatagagttgcgggtgaaggagtggtttgggga |
7801407 |
T |
|
| Q |
320 |
gatcggtggggttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtagtgagattgggaatgg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801406 |
gatcggtggggttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtagtgagattgggaatgg |
7801332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 29 - 335
Target Start/End: Complemental strand, 7774786 - 7774481
Alignment:
| Q |
29 |
tttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacagagatcctga |
128 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
7774786 |
tttatacttagtaaccc-ccctctaaccctagcaacaactccaaccttcaccacttccgccaacctcgcagcagcatcaacaagaagacaaagatcctga |
7774688 |
T |
|
| Q |
129 |
ggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaatacaagggatgcaaccggttccgtcgtcgatagcgaaacggaggaatt |
228 |
Q |
| |
|
|||||||||| ||||| || ||||| || ||||||||||| ||||| ||||| |||||||||| | |||||| ||||||| ||||||| ||||||| |
|
|
| T |
7774687 |
ggactacgccatcgagccaattgaggcgaggtcatgtggttgagccaaagaatgaaagggatgcagcaggttccaccgtcgatggcgaaaccaaggaatt |
7774588 |
T |
|
| Q |
229 |
tgaagggtttgtggtcgcggaggattatggttcctacggtttcggcgcgtgtgatggggatagagttgcgggtgaaggagtggtttggggagatcggtgg |
328 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||| |||||||| |||||||||||||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
7774587 |
tgaagggtttgtggtcgcagagggttatggttgctagggtttcggtgcgtgtgatggggaggatgttgcgaatgaaggagtggtttggagagagtggtgg |
7774488 |
T |
|
| Q |
329 |
ggttagg |
335 |
Q |
| |
|
||||||| |
|
|
| T |
7774487 |
ggttagg |
7774481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 462 - 597
Target Start/End: Complemental strand, 7801265 - 7801126
Alignment:
| Q |
462 |
gatatggttcaaattgttcaaatggtttttgtgtgataga----gtgacagtggcttacaaattttataactatttttctaagtttgactttagtcaaac |
557 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801265 |
gatatggttgaaattgttcaaatggtttttgtgtgatagatagagtgacagtggcttacaaattttataactatttttctaagtttgactttagtcaaac |
7801166 |
T |
|
| Q |
558 |
ggctaacttaattactaaacaaaaaactcatagtatatga |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7801165 |
ggctaacttaattactaaacaaaaaactcatagtatatga |
7801126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 7772501 - 7772443
Alignment:
| Q |
331 |
ttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtagtgagattggg |
389 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
7772501 |
ttagggttaggagatcgattgctagtagcttcacatgtgtgttgtgtagtgagattggg |
7772443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 11934468 - 11934094
Alignment:
| Q |
20 |
cacccctcctttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11934468 |
cacccctcctttatactccgtaaccctccctctaaccctagcaacattcccaatcttcaccacttccgccgatctcgcagcagcatcagcaagaagacag |
11934369 |
T |
|
| Q |
120 |
agatcctgaggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaatacaagggatgcaaccggttccgtcgtcgatagcgaaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11934368 |
agatcctgaggactacgccggcgagctaaatgaggagaagtcatatgattaagccagagaatgcaagggatgcaacccgttccgtcgtcgatagcgaaac |
11934269 |
T |
|
| Q |
220 |
ggaggaatttgaagggtttgtggtcgcggaggattatggttcctacggtttcggcgcgtgtgatggggatagagttgcgggtgaaggagtggtttgggga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11934268 |
ggaggaatttgaagggtttgtggtcgcggagggttatggttcctacggtttcggcgcgtgtgatggagatagagttgcgggtgaaggagtggtttgggga |
11934169 |
T |
|
| Q |
320 |
gatcggtggggttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtagtgagattgggaatgg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11934168 |
gatcggtggggttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtagtgagattgggaatgg |
11934094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 459 - 691
Target Start/End: Complemental strand, 11934029 - 11933810
Alignment:
| Q |
459 |
aaggatatggttcaaattgttcaaatggtttttgtgtgatagagtgacagtggcttacaaattttataactatttttctaagtttgactttagtcaaacg |
558 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11934029 |
aaggatatggtcgaaattgttcaaatggtttttgtgtgatagagtgacagtggcttacaaattttataactatttttctaagtttgactttagtcaaacg |
11933930 |
T |
|
| Q |
559 |
gctaacttaattactaaacaaaaaactcatagtatatgactatgttggataaaaaattgatcagcaatgataagtgaacacaaaaaaccaacacaataca |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11933929 |
gctaacttaattactaaacaaaaaactcatagtatatgactatgttggataaaaaattgat-------------tgaacacaaaaaaccaacacaataca |
11933843 |
T |
|
| Q |
659 |
gacaccaccgtatatttatacggtattttctac |
691 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
11933842 |
gacgccaccgtatatttatacggtattttctac |
11933810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 29 - 379
Target Start/End: Complemental strand, 11923259 - 11922909
Alignment:
| Q |
29 |
tttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacagagatcctga |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||| || ||||| |||||||||| ||||||||| |
|
|
| T |
11923259 |
tttatacttagtaaccctccctctaaccctagcaacaactccaaccttcaccacttccgccaaccttgcaacaacatcaacaagaagacaaagatcctga |
11923160 |
T |
|
| Q |
129 |
ggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaatacaagggatgcaaccggttccgtcgtcgatagcgaaacggaggaatt |
228 |
Q |
| |
|
||||||||| |||||| || ||||| || ||||||||||| ||||| ||||| |||||| ||||| |||||| ||||||| || |||| ||||||| |
|
|
| T |
11923159 |
ggactacgctagcgagccaagtgaggtgaggtcatgtggttgagccaaagaatgaaagggacgcaacaggttccaccgtcgatggcaaaaccaaggaatt |
11923060 |
T |
|
| Q |
229 |
tgaagggtttgtggtcgcggaggattatggttcctacggtttcggcgcgtgtgatggggatagagttgcgggtgaaggagtggtttggggagatcggtgg |
328 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||| || | |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
11923059 |
tgaagggtttgtggtcgcggagggttatggttgctagggtttcgatgcgtgtgatggtgagggtgttgcgaatgaaggagtggtttggagagagtggtgg |
11922960 |
T |
|
| Q |
329 |
ggttagggttagaagatcgaaagctaatagctttacatgtgtgttgtgtag |
379 |
Q |
| |
|
||| |||||||| ||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
11922959 |
ggtgagggttaggagatcgattgctagtagcttcacatgtgtgttgtgtag |
11922909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 709 - 760
Target Start/End: Complemental strand, 11933779 - 11933728
Alignment:
| Q |
709 |
ctttccctgttattgtatcttctctcactccctccccactctctgcttctcc |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
11933779 |
ctttccctgttattgtatcttctctcactccctctccactgtttgcttctcc |
11933728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 687
Target Start/End: Complemental strand, 50470532 - 50470494
Alignment:
| Q |
649 |
acacaatacagacaccaccgtatatttatacggtatttt |
687 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
50470532 |
acacaatacagacaccaccgtataattatatggtatttt |
50470494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 462 - 618
Target Start/End: Original strand, 8558725 - 8558879
Alignment:
| Q |
462 |
gatatggttcaaattgttcaaatggtttttgtgtgata----gagtgacagtggcttacaaattttataactatttttctaagtttgactttagtcaaac |
557 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8558725 |
gatatggttgaaattgttcaaatggtttttgtgtgatagatagagtgacagtggcttacaaattttataacta-----------ttgactttagtcaaac |
8558813 |
T |
|
| Q |
558 |
ggctaacttaattact------aaacaaaaaactcatagtatatgactatgttggataaaaaattga |
618 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8558814 |
ggctaacttaattactagtataaaacaaaaaactcatagtatat-actatgttggataaaaaattga |
8558879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 8569311 - 8569462
Alignment:
| Q |
29 |
tttatactccgtaaccctccctctaaccctagcaacattcccaaccttcaccacttccgccgatctcgcagcagcatcagcaagaagacagagatcctga |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| |||||||||| |||| |||| |
|
|
| T |
8569311 |
tttatacttagtaaccctccctctaaccctagcaacagctccaaccttcaccacttccgccaacctcgcagtagcatcaacaagaagacaaagat-ctga |
8569409 |
T |
|
| Q |
129 |
ggactacgccggcgagctaaatgaggagaagtcatgtggttaagccagagaat |
181 |
Q |
| |
|
|||||||||| |||||| || ||||| || ||||||||||| ||||| ||||| |
|
|
| T |
8569410 |
ggactacgccagcgagccaagtgaggtgaggtcatgtggttgagccaaagaat |
8569462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 620 - 691
Target Start/End: Complemental strand, 11254364 - 11254289
Alignment:
| Q |
620 |
cagcaatgataagtgaacacaaaaaa----ccaacacaatacagacaccaccgtatatttatacggtattttctac |
691 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11254364 |
cagcaatgataagtgaacacaaaaaaaaaaccaacacaatacagacaccaccgtatatttatacggtattttctac |
11254289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 688
Target Start/End: Original strand, 10901932 - 10902002
Alignment:
| Q |
618 |
atcagcaatgataagtgaacacaaaaaa--ccaacacaatacagacaccaccgtatatttatacggtattttc |
688 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
10901932 |
atcagcaatgataagtgaacacaaaaaaaccaaacacaatatagacacca--gtatgtttatacggtattttc |
10902002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 686
Target Start/End: Complemental strand, 9372939 - 9372902
Alignment:
| Q |
649 |
acacaatacagacaccaccgtatatttatacggtattt |
686 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9372939 |
acacaatacagacaccaccgtataattatacggtattt |
9372902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 620 - 687
Target Start/End: Original strand, 16301402 - 16301470
Alignment:
| Q |
620 |
cagcaatgataagtgaacacaaaaaacc-aacacaatacagacaccaccgtatatttatacggtatttt |
687 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
16301402 |
cagcaatgataactgaacacaaaaaacccaacacaatacagacaccaccgtatgtttatagtgtatttt |
16301470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 687
Target Start/End: Complemental strand, 51791267 - 51791198
Alignment:
| Q |
621 |
agcaatgataagtgaacac---aaaaaaccaacacaatacagacaccaccgtatatttatacggtatttt |
687 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
51791267 |
agcaatgataagtgaacacgaaaaaaaacaaacacaatacagacaccactatatttttatgcggtatttt |
51791198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 687
Target Start/End: Complemental strand, 37357394 - 37357327
Alignment:
| Q |
620 |
cagcaatgataagtgaacacaaaaaacca-acacaatacagacaccaccgtatatttatacggtatttt |
687 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
37357394 |
cagcaatgatacatgaacacaaaaaaacatacacaatacagacaccaccgtat-tttatacagtatttt |
37357327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 686
Target Start/End: Complemental strand, 11916622 - 11916585
Alignment:
| Q |
649 |
acacaatacagacaccaccgtatatttatacggtattt |
686 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
11916622 |
acacaatacagacaccaccgtataattataaggtattt |
11916585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 665
Target Start/End: Complemental strand, 3267766 - 3267724
Alignment:
| Q |
624 |
aatgataagtgaacacaaaaaacc-aacacaatacagacacca |
665 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
3267766 |
aatgataagtgaacacaaaaatccaaacacaatacagacacca |
3267724 |
T |
|
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