View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11789_low_4 (Length: 673)
Name: NF11789_low_4
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11789_low_4 |
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| [»] scaffold0398 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 43040346 - 43040065
Alignment:
| Q |
13 |
taggaaaagaagaacatgattatggtatctcttccttttgtgttcttctgcttagttcttggttttggtttttatttctttggaagtgctagaggaagac |
112 |
Q |
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| T |
43040346 |
taggaaaagaagaacatgattatggtatctcttccttttgtgttcttctgcttagttcttggttttggtttttatttctttggaagtgctagaggaagac |
43040247 |
T |
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| Q |
113 |
gtggtgtatacacaaaccctcaagtttctggtatgccaattccaccacaaggcactgcagttgcaaatagtaccttcccttaatcatcttctccaaccca |
212 |
Q |
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| T |
43040246 |
gtggtgtatacacaaaccctcaagtttatggtatgccaattccaccacgaggcactgcaattgcaaatagtaccttcccttaatcttcttctccaaccca |
43040147 |
T |
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| Q |
213 |
atattccaaaacatcttaatgaatcttaattggactctcatcaacattcatcttctttgaaaaagacggttagtccgcggtt |
294 |
Q |
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| T |
43040146 |
atattccaaaccatcttaatgaatcttaattggactcacatcaacattcatcttcttttaaaaagacggttagtccccggtt |
43040065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 356 - 658
Target Start/End: Complemental strand, 43040003 - 43039703
Alignment:
| Q |
356 |
atttcttatgtttcattgcttcatcaaccacctcatttgcaattaagataccgtccaaaatttacctcccttttacaaacgattgactttctaaaatcac |
455 |
Q |
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| T |
43040003 |
atttcttatgtttcatttcttcatcaaccacctcatttgcaattaagataccgtccaaaatttatctcccttttagaaacgattgactttctaaaatcac |
43039904 |
T |
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| Q |
456 |
caaataacttacttcaccatactaaaaccatagccatcatcttataaatacataaaatcaaaggaattggatggaaatgggccaacctatcaacacnnnn |
555 |
Q |
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| T |
43039903 |
caaataacttacttcaccatactaaaaccatagccatcatcttataaatacatacaaccaaaggaattggatggaaatgggccaacctatcaacac-aaa |
43039805 |
T |
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| Q |
556 |
nnnngtgcagtttcgaacattaaaaaatattataaagtcaaccttgaaggccagctaaactattttaaggaaccaaaatttaaaccatatggtccaaaat |
655 |
Q |
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| T |
43039804 |
aaaagtgcag-ttagaacattaaaaaatattataaagtcaaccttgaaggccagctaaactattttaaggaaccaaaatttaaaccatatggtccaaaat |
43039706 |
T |
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| Q |
656 |
ttt |
658 |
Q |
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||| |
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| T |
43039705 |
ttt |
43039703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 43044842 - 43044659
Alignment:
| Q |
38 |
tatctcttccttttgtgttcttctgcttagttcttggttttggtttttatttctttggaagtgctagaggaagacgtggtgtatacacaaaccctcaagt |
137 |
Q |
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| T |
43044842 |
tatctcttccttttatattcttctgcttagttattggttttggttgttacttctttggaagagctagaggaagacgtgatgtatacacaaaccctcaagt |
43044743 |
T |
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| Q |
138 |
ttctggtatgccaattccaccacaaggcactgcagttgcaaatagtaccttcccttaatcatcttctccaacccaatattccaa |
221 |
Q |
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| T |
43044742 |
ttatggtatgccaattccaccaccaggcactgctgctgcaaatagttccttcccttcatcatctcctccaccacaatattccaa |
43044659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 32745332 - 32745380
Alignment:
| Q |
388 |
tcatttgcaattaagataccgtccaaaatttacctcccttttacaaacg |
436 |
Q |
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| T |
32745332 |
tcatttgcaattagaataccgtccaaaatttgtttcccttttacaaacg |
32745380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0398 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0398
Description:
Target: scaffold0398; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 16137 - 16412
Alignment:
| Q |
13 |
taggaaaagaagaacatgattatggtatctcttccttttgtgttcttctgcttagttcttggttttggtttttatttctttggaagtgctagaggaagac |
112 |
Q |
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| T |
16137 |
taggaaaagaagaacatgattatggtatctcttccttttgtgttcttctgcttagttcttggttttggtttttatttctttggaagtgctagaggaagac |
16236 |
T |
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| Q |
113 |
gtggtgtatacacaaaccctcaagtttctggtatgccaattccaccacaaggcactgcagttgcaaatagtaccttcccttaatcatcttctccaaccca |
212 |
Q |
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| T |
16237 |
gtggtgtatacacaaaccctcaagtttatggtatgccaattccaccacgaggcactgcaattgcaaatagtaccttcccttaatcttcttctccaaccca |
16336 |
T |
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| Q |
213 |
atattccaaaacatcttaatgaatcttaattggactctcatcaacattcatcttctttgaaaaagacggttagtcc |
288 |
Q |
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| T |
16337 |
atattccaaaccatcttaatgaatcttaattggactcacatcaacattcatcttcttttaaaaagacggttagtcc |
16412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 37327220 - 37327283
Alignment:
| Q |
371 |
ttgcttcatcaaccacctcatttgcaattaagataccgtccaaaatttacctcccttttacaaa |
434 |
Q |
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| T |
37327220 |
ttgcttcatcaaccacctcattagccatcaagataccatctaaaatttgcttccctttaacaaa |
37327283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 456
Target Start/End: Complemental strand, 31658287 - 31658204
Alignment:
| Q |
376 |
tcatcaaccacctcatttgcaattaagataccgtccaaaatttacctcccttttacaaac---gattgactttctaaaatcacc |
456 |
Q |
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|||||||| ||||||||||||||||||||| ||||| ||||| |||||||| || ||| |||||||||| | |||||||| |
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| T |
31658287 |
tcatcaactacctcatttgcaattaagatattgtccataatttgtctccctttaactaactttgattgactttgtgaaatcacc |
31658204 |
T |
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