View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11789_low_7 (Length: 510)

Name: NF11789_low_7
Description: NF11789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11789_low_7
NF11789_low_7
[»] chr1 (8 HSPs)
chr1 (19-424)||(31320543-31320949)
chr1 (244-379)||(25965410-25965545)
chr1 (243-387)||(26101993-26102137)
chr1 (243-385)||(27461216-27461358)
chr1 (268-360)||(15417033-15417125)
chr1 (250-380)||(18795124-18795254)
chr1 (308-360)||(13807852-13807904)
chr1 (248-368)||(34381663-34381783)
[»] chr8 (5 HSPs)
chr8 (243-387)||(10866924-10867068)
chr8 (268-387)||(13530165-13530284)
chr8 (268-387)||(13619704-13619823)
chr8 (314-386)||(12774949-12775021)
chr8 (310-358)||(41505639-41505687)
[»] chr5 (5 HSPs)
chr5 (268-384)||(24846200-24846316)
chr5 (26-99)||(17459841-17459914)
chr5 (310-387)||(26070411-26070487)
chr5 (275-387)||(24130591-24130703)
chr5 (243-283)||(24410964-24411004)
[»] chr4 (6 HSPs)
chr4 (243-387)||(10576389-10576533)
chr4 (310-387)||(17339915-17339992)
chr4 (312-382)||(16442363-16442432)
chr4 (243-360)||(24925768-24925885)
chr4 (268-368)||(31859940-31860040)
chr4 (250-359)||(21167693-21167802)
[»] chr2 (7 HSPs)
chr2 (243-373)||(24047332-24047462)
chr2 (248-332)||(18116974-18117058)
chr2 (269-367)||(32276574-32276672)
chr2 (243-384)||(39730386-39730527)
chr2 (253-332)||(15454575-15454654)
chr2 (319-384)||(21505250-21505315)
chr2 (268-360)||(31449920-31450012)
[»] chr3 (2 HSPs)
chr3 (243-379)||(21829167-21829303)
chr3 (319-392)||(25919575-25919648)
[»] chr6 (5 HSPs)
chr6 (245-380)||(12972421-12972556)
chr6 (243-356)||(9943184-9943297)
chr6 (310-360)||(26512879-26512929)
chr6 (310-360)||(26517995-26518045)
chr6 (316-384)||(1755660-1755728)
[»] chr7 (4 HSPs)
chr7 (309-368)||(19140075-19140134)
chr7 (309-368)||(20739474-20739533)
chr7 (319-384)||(29544458-29544523)
chr7 (339-387)||(22532774-22532822)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 31320543 - 31320949
Alignment:
Q  19 ttttgtcgtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacaccatttacaactgtagcgtgaatgtggggacc 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  31320543 ttttgttgtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacatcatttacaaccgtggcgtgaatgtggggacc 31320642  T
Q  119 atttttgactgctttctagatttctgaaccttgtgcttcaagaaatatttgcatacaaattttctgaaaatcatagggctcaccagtgaaacttggtgga 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31320643 atttttgactgctttctagatttttgaaccttgtgcttcaagaaatatctgcatacaaattttctgaaaatcatagtgctcaccagtgaaacttggtgga 31320742  T
Q  219 gggtttatgttaga-ccttcacccaaaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgac 317  Q
     ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |     
T  31320743 cggtttatgttagacccttcacccaaaaactgaattacaattactcaaaagaaaataatacaaaatattctttaaacaatgaacaaattctctaaattaa 31320842  T
Q  318 ctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatcttcagatatacatagttaagagatgatttg 417  Q
    ||||||||| | |||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31320843 ctcttatttctgttcgaatgcaaataaactaactaaaaacataacaaaaaacatcatatgatgctccatcttcagatatacatagttaagagatgatttg 31320942  T
Q  418 aatacga 424  Q
    |||||||    
T  31320943 aatacga 31320949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 25965410 - 25965545
Alignment:
Q  244 aaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaata 343  Q
    ||||||||||||||| |||  || || || |||||||||||||  | |||| ||| |||| | |||||||||||||||||||||||||  | |  ||| |    
T  25965410 aaactgaattacaacgactcgaatgagaagaatacaaaatattgctcaaactatgtacaactcctttaaatgacctcttatttgtctttaagtacaaaga 25965509  T
Q  344 aattaactaaaaacataaccaaaaacatcacatgat 379  Q
    || ||||||||||||||||| ||||||||| |||||    
T  25965510 aaataactaaaaacataacctaaaacatcatatgat 25965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 26102137 - 26101993
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||||||| |||  || ||||||||||||||||  || | |||| ||  | ||||||| ||||||||||||||||||  ||| |||| |||     
T  26102137 aaaagtgaattacaacaactcgaatgaaaacaatacaaaatggtcctcaaaccattgataaattctctaaatgacctcttatttgcgttcaaatgcaaag 26102038  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    ||| |||||||||||||  || |||| |||| |||||||||||||    
T  26102037 aaaataactaaaaacatcgcctaaaatatcatatgatgctccatc 26101993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 385
Target Start/End: Original strand, 27461216 - 27461358
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||| ||| |||| || |||||||||||||||| ||| | |||  ||| |||| | || ||||||||||||||||||| ||| |||  ||||    
T  27461216 aaaagtgaattataacaacttgaatgaaaacaatacaaaatgttcctcaaattatggacaattgctctaaatgacctcttatttgtattcaaatacaaat 27461315  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgatgctcca 385  Q
    ||| |||||||||||||| |  |||| |||| |||| ||||||    
T  27461316 aaaataactaaaaacatagcgtaaaatatcatatgacgctcca 27461358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 360
Target Start/End: Original strand, 15417033 - 15417125
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 360  Q
    |||||||||| ||||| ||  | |||| |||||||| | |||||||||| ||||||||||||||| ||||  |||||| ||||||||||||||    
T  15417033 gaaaacaataaaaaatgtttctcaaaccatgaacaactcctttaaatgatctcttatttgtcttcaaatgcgaataaaataactaaaaacata 15417125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 380
Target Start/End: Complemental strand, 18795254 - 18795124
Alignment:
Q  250 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 349  Q
    |||||||| |||| ||| |||||| ||||||||| ||| | |||| ||  | |||| || |||||||||||||||||  |||| |||| ||| ||| | |    
T  18795254 aattacaattactcaaatgaaaacgatacaaaatgttcctcaaaccattgataaatcctctaaatgacctcttattttccttcaaatgcaaagaaaatca 18795155  T
Q  350 ctaaaaacataaccaaaaacatcacatgatg 380  Q
    ||| ||||||| || |||| |||||||||||    
T  18795154 ctagaaacatagcctaaaatatcacatgatg 18795124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 13807852 - 13807904
Alignment:
Q  308 tttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 360  Q
    |||| |||||||||||||||||||| ||||||||| || || |||||||||||    
T  13807852 tttacatgacctcttatttgtcttcaaatgtaaatgaaatatctaaaaacata 13807904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 34381783 - 34381663
Alignment:
Q  248 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaatt 347  Q
    ||||||||||| |||  || |||||||||| || || ||||| |||| || ||||| | || ||||| || ||||||||| |||| |||| |||||||      
T  34381783 tgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaacaactcctctaaattacatcttatttgccttcaaatgcaaataaaac 34381684  T
Q  348 aactaaaaacataaccaaaaa 368  Q
     | ||||||||||||| ||||    
T  34381683 taataaaaacataacctaaaa 34381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 10867068 - 10866924
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||| | |||| ||  |||| | || |||||||||||||||||| ||||||||  |||     
T  10867068 aaaactgaattacaacgactcaaatgaaaacaatacaaaatattcctcaaaccattgacaactactctaaatgacctcttatttgccttcgaattcaaag 10866969  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    ||| ||||||||| |||| | ||||| |||| |||||| ||||||    
T  10866968 aaaataactaaaatcataccaaaaaatatcatatgatgttccatc 10866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 13530165 - 13530284
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 367  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13530165 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13530264  T
Q  368 acatcacatgatgctccatc 387  Q
    |||||| |||||||||||||    
T  13530265 acatcatatgatgctccatc 13530284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 13619704 - 13619823
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 367  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13619704 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13619803  T
Q  368 acatcacatgatgctccatc 387  Q
    |||||| |||||||||||||    
T  13619804 acatcatatgatgctccatc 13619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 12774949 - 12775021
Alignment:
Q  314 tgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccat 386  Q
    ||||||||||||||||||| ||||  || ||| |||||||||||| | ||||||  |||| ||||||||||||    
T  12774949 tgacctcttatttgtcttcaaatgctaaaaaaataactaaaaacaaagccaaaagtatcatatgatgctccat 12775021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 41505639 - 41505687
Alignment:
Q  310 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaaca 358  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  41505639 taaatgacctcttatttgtcttcaaatgcaaagaaaataactaaaaaca 41505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 24846316 - 24846200
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 367  Q
    ||||| |||| ||||||||| | |||| ||| | |||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||| ||| || |||    
T  24846316 gaaaaaaatataaaatattcctcaaaccatggaaaaatcctctaaatgacctcttatttgtcttcaaatgcaaagaaagtaactaaaaatatagcctaaa 24846217  T
Q  368 acatcacatgatgctcc 384  Q
    |||||| || |||||||    
T  24846216 acatcatatcatgctcc 24846200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 17459841 - 17459914
Alignment:
Q  26 gtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacaccatttacaactg 99  Q
    |||||||||||||| |||| ||||||||||| || | |||| | ||||| |||||||||| |||||||||||||    
T  17459841 gtatagaacctttttgtgatcatcttcatcccaacatgtttttggttttggtgaacttacgccatttacaactg 17459914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 387
Target Start/End: Complemental strand, 26070487 - 26070411
Alignment:
Q  310 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    |||||||||||||||||| |||  |||| ||| ||| |||||||||||||| ||||||| |||| |||||| ||||||    
T  26070487 taaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatagccaaaaa-atcatatgatgttccatc 26070411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 24130703 - 24130591
Alignment:
Q  275 atacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcac 374  Q
    ||||||||| ||| | |||| ||  |||||| || ||| |||||||||||||| |||  |||| ||||| | |||||| ||||||| || |||| ||||     
T  24130703 atacaaaatgttcctcaaaccattgacaaatgctctaattgacctcttatttgccttaaaatgcaaatacaataactataaacatagcctaaaatatcat 24130604  T
Q  375 atgatgctccatc 387  Q
    || ||||||||||    
T  24130603 atcatgctccatc 24130591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 24410964 - 24411004
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaat 283  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  24410964 aaaactgaattacaacgactcaaatgaaaacaatacaaaat 24411004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 10576533 - 10576389
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||||| |||| ||| |||| |||| ||||||| |||||||||  |||| |||| |||     
T  10576533 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttcttcaaaccatggacaacttctctaaatgatctcttattttccttcaaatggaaag 10576434  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    ||| ||||||||||||||  | |||| |||| ||||| |||||||    
T  10576433 aaaataactaaaaacatagtctaaaatatcatatgatactccatc 10576389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 17339915 - 17339992
Alignment:
Q  310 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    |||||| ||||||||||| |||  |||||||||||| ||| |||||||||| || |||| |||| |||||||||||||    
T  17339915 taaatgtcctcttatttgcctttaaatgtaaataaaataattaaaaacatagcctaaaatatcatatgatgctccatc 17339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 16442363 - 16442432
Alignment:
Q  312 aatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgct 382  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||| ||||| || ||||||||| ||||||||    
T  16442363 aatgacctcttatttgtcttcaaatgcaaagaaa-taactaaacacatagccgaaaacatcatatgatgct 16442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 360
Target Start/End: Complemental strand, 24925885 - 24925768
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||||| | ||| ||| |||||||||||||||| ||  | |||| ||  |||| |  |||||||||| |||||||| ||||| |||  ||||    
T  24925885 aaaagtgaattacagcgactcaaatgaaaacaatacaaaatgttactcaaacgattgacaactcttttaaatgacttcttatttatcttcaaatacaaat 24925786  T
Q  343 aaattaactaaaaacata 360  Q
    ||| ||||||||||||||    
T  24925785 aaaataactaaaaacata 24925768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 31859940 - 31860040
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 367  Q
    ||||||| | |||||| ||| | |||||||  |||| |||| ||||| |||| |||||| ||||| |||| ||| ||| |||||||||||||| ||||||    
T  31859940 gaaaacagtgcaaaatgttcctcaaacaattgacaacttctctaaataaccttttatttttcttcaaatgcaaaaaaaataactaaaaacatagccaaaa 31860039  T
Q  368 a 368  Q
    |    
T  31860040 a 31860040  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 21167802 - 21167693
Alignment:
Q  250 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 349  Q
    ||||||||| |||  || |||||||||||||||| ||| |||||  ||| |||| | || |||||||| ||||||||  |||| |||| |||  || |||    
T  21167802 aattacaacaactcgaatgaaaacaatacaaaatgttccttaaaacatggacaactcctctaaatgacgtcttattttccttcaaatgcaaaacaaataa 21167703  T
Q  350 ctaaaaacat 359  Q
    ||||||||||    
T  21167702 ctaaaaacat 21167693  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 24047462 - 24047332
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||| |||||| ||  |||| |||| ||||| |||||||||||  |||| |||| ||||    
T  24047462 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttccttaaaccattgacaatttctctaaataacctcttattttccttcaaatgcaaat 24047363  T
Q  343 aaattaactaaaaacataaccaaaaacatca 373  Q
    ||| |||||||||||||| || |||| ||||    
T  24047362 aaaataactaaaaacatagcctaaaatatca 24047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 18117058 - 18116974
Alignment:
Q  248 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 332  Q
    ||||||||||  ||| ||| |||||||||||||||| ||| | |||| |||| ||||| || |||||||||||| ||||||||||    
T  18117058 tgaattacaatgactcaaatgaaaacaatacaaaatgttcgtcaaaccatgaccaaatcctctaaatgacctctcatttgtcttc 18116974  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 367
Target Start/End: Original strand, 32276574 - 32276672
Alignment:
Q  269 aaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 367  Q
    |||||||| |||||| ||||| |||| ||  |||  | ||||||||||||||||||||  |||| |||| ||| ||| |||||||||||||| ||||||    
T  32276574 aaaacaatgcaaaatgttcttcaaaccattgacatctcctttaaatgacctcttattttccttcaaatgcaaagaaaataactaaaaacatatccaaaa 32276672  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 384
Target Start/End: Complemental strand, 39730527 - 39730386
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| ||||||||||| |||| ||  ||||| ||| ||||| ||| |||||| |  ||||| |  | ||||||||| ||||||||||||| | | ||||     
T  39730527 aaaagtgaattacaacgacttgaataaaaactatagaaaatgttccttaaaccacaaacaactcatctaaatgaccccttatttgtcttcaattataaag 39730428  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgatgctcc 384  Q
    ||| |||||||||||||| || |||| || | ||||||||||    
T  39730427 aaaataactaaaaacatagcctaaaatattatatgatgctcc 39730386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 15454575 - 15454654
Alignment:
Q  253 tacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 332  Q
    |||||| ||| ||||||||||||||||||||  || |||||  ||  |||| | ||||||||||||| ||||||||||||    
T  15454575 tacaacgactcaaaagaaaacaatacaaaatgatccttaaagcatagacaactcctttaaatgacctattatttgtcttc 15454654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 21505250 - 21505315
Alignment:
Q  319 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 384  Q
    |||||||||||||| |||| ||| |||   |||||||||||| ||||||| |||| ||||||||||    
T  21505250 tcttatttgtcttcaaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctcc 21505315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 31450012 - 31449920
Alignment:
Q  268 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 360  Q
    ||||| |||||||||||||| | |||| ||  |||| | || |||||||| | | | |||||||| |||| ||||||| ||||||||||||||    
T  31450012 gaaaaaaatacaaaatattcctaaaaccatctacaactcctctaaatgacttataaattgtcttcaaatgcaaataaaataactaaaaacata 31449920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 379
Target Start/End: Original strand, 21829167 - 21829303
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||||||||||||||| ||| ||| ||||| |||||||||| ||| | |||| ||  |||| | || |||||||||||||||||  |||| |||| ||||    
T  21829167 aaaactgaattacaacgactcaaatgaaaataatacaaaatgttcctcaaaccattgacaactcctctaaatgacctcttattttccttcaaatgcaaat 21829266  T
Q  343 aaattaactaaaaacataaccaaaaacatcacatgat 379  Q
    ||| ||| |||||| |||  |||||| |||| |||||    
T  21829267 aaaataaataaaaatatagtcaaaaatatcatatgat 21829303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 25919575 - 25919648
Alignment:
Q  319 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatcttcag 392  Q
    |||||||||||||| |||  ||| ||||  |||||||||||||||| ||| |||| ||||||||||||| ||||    
T  25919575 tcttatttgtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgatgctccatcatcag 25919648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 380
Target Start/End: Original strand, 12972421 - 12972556
Alignment:
Q  245 aactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataa 344  Q
    ||||||||||||||  ||| || |||| ||||||||||| |||  ||||  ||  |||| | || |||||||||||||| ||| |||| |||| ||| ||    
T  12972421 aactgaattacaacgtcttgaatgaaagcaatacaaaattttccgtaaaacattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaa 12972520  T
Q  345 attaactaaaaacataaccaaaaacatcacatgatg 380  Q
    | |||||||||||||| ||||||| |||| ||||||    
T  12972521 aataactaaaaacatagccaaaaatatcaaatgatg 12972556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 9943184 - 9943297
Alignment:
Q  243 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 342  Q
    |||| |||||||||||  ||| || || ||| ||||||||||||| | |||| ||| |||| | || |||||||||||||||||||||||   ||||||     
T  9943184 aaaagtgaattacaacagcttgaatgataactatacaaaatattcctcaaacgatggacaactcctctaaatgacctcttatttgtcttcaggtgtaaaa 9943283  T
Q  343 aaattaactaaaaa 356  Q
    ||| ||||||||||    
T  9943284 aaaataactaaaaa 9943297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 26512879 - 26512929
Alignment:
Q  310 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 360  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26512879 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26512929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 26517995 - 26518045
Alignment:
Q  310 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 360  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26517995 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 1755660 - 1755728
Alignment:
Q  316 acctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 384  Q
    ||||||||||||||||| |||  ||| ||| |||||||||||||||||  | | |||| ||||||||||    
T  1755660 acctcttatttgtcttcaaattcaaagaaaataactaaaaacataacctgatatatcatatgatgctcc 1755728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 19140075 - 19140134
Alignment:
Q  309 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 368  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  19140075 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 19140134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 20739474 - 20739533
Alignment:
Q  309 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 368  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  20739474 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 20739533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 29544523 - 29544458
Alignment:
Q  319 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 384  Q
    |||||||||||||| |||| ||| ||| | | |||||||||| ||||||| |||| ||||||||||    
T  29544523 tcttatttgtcttcaaatgcaaagaaaattaataaaaacatagccaaaaatatcatatgatgctcc 29544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 22532774 - 22532822
Alignment:
Q  339 aaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 387  Q
    ||||||| |||||||||||||| || |||| |||| |||||||||||||    
T  22532774 aaataaaataactaaaaacatagcctaaaatatcatatgatgctccatc 22532822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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